Browse Element(s) Details


Os.7792.1.S1_at

Description gb:AK069926.1
DB_XREF= gi:32979950
TID=Os.7792.1
CNT=75
FEA=FLmRNA
TIER=FL+Stack
STK=47
UG=Os.7792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036B01, full insert sequence.
FL= gb:AK069926.1 gb:AK122097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3769011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7792.1.S1_at--461--6271Chr04:22198104..22198128 (25 bp)
GATGTTGCCTCTGTAAAAATTCCTC
LOC_Os04g37690
Os.7792.1.S1_at--1023--2971Chr04:22198138..22198162 (25 bp)
AATGTGGCTTTGTTCAATTCGTCAG
LOC_Os04g37690
Os.7792.1.S1_at--1015--2331Chr04:22198302..22198326 (25 bp)
AAAGCAGGCAGTTCGCCTTTCATGG
LOC_Os04g37690
Os.7792.1.S1_at--919--2131Chr04:22199604..22199627 (24 bp)
ACAGTCTAGGGCTGATTCTGGCAGC
LOC_Os04g37690
Os.7792.1.S1_at--566--751Chr04:22199640..22199664 (25 bp)
ATGTACTATGGGACGCCATTCTACG
LOC_Os04g37690
Os.7792.1.S1_at--860--9511Chr04:22199659..22199683 (25 bp)
TCTACGGTGGATACGGTTATGCCTC
LOC_Os04g37690
Os.7792.1.S1_at--956--831Chr04:22199719..22199743 (25 bp)
ATGGAGCCTACCCTGTCTATGGCAG
LOC_Os04g37690
Os.7792.1.S1_at--714--7151Chr04:22199733..22199757 (25 bp)
GTCTATGGCAGTCAGCAGCTAGTGA
LOC_Os04g37690
Os.7792.1.S1_at--500--2451Chr04:22199809..22199833 (25 bp)
AACAAGGTTTTGGTCCGGTCAGCAT
LOC_Os04g37690
Os.7792.1.S1_at--548--3971Chr04:22199824..22199848 (25 bp)
CGGTCAGCATGGTAGCGCCAGATGT
LOC_Os04g37690
Os.7792.1.S1_at--424--7391Chr04:22199956..22199980 (25 bp)
GTGAGTCGATGGTATTCTTTCAAGA
LOC_Os04g37690
Target Sequence 
GATGTTGCCTCTGTAAAAATTCCTCTAGGGAAGCAATGTGGCTTTGTTCAATTCGTCAGCAGAACTGATGCGGAAGAAGC
ACTGCAAGGATTGAATGGATCAGTCATTGGAAAGCAGGCAGTTCGCCTTTCATGGGGCCGCAGCCCATCACATANAACAG
TCTAGGGCTGATTCTGGCAGCCGAAGAAACAATATGTACTATGGGACGCCATTCTACGGTGGATACGGTTATGCCTCCCC
CGTCCCGCACCCTAACATGTATGCTGCTGCATATGGAGCCTACCCTGTCTATGGCAGTCAGCAGCTAGTGAGCTAGAGAA
GAGAGAGAGAGAGAGAGCTTCATTCCATTCCCTCCAATGGAAAACAAGGTTTTGGTCCGGTCAGCATGGTAGCGCCAGAT
GTGAGGTTATAGAACGTCCTAAAAGCGAGTGAAACAGGTAAAATGAATGTATGGTATCTGTAGTGTTGTCTGTGTTGCAA
GAAGTATAACTCAAGGCTTGTAGACACAAGTGAGTCGATGGTATTCTTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis