Browse Element(s) Details


OsAffx.31683.2.S1_at

Description tigr:9632.m03550
TID=OsAffx.31683.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3773011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31683.2.S1_at--28--4131Chr04:22217085..22217109 (25 bp)
CGCACGCCCTGGTGATACCGGTGGA
LOC_Os04g37730
OsAffx.31683.2.S1_at--154--9171Chr04:22217289..22217313 (25 bp)
TGCCGCAGCACGTGCGGGACGAGGT
LOC_Os04g37730
OsAffx.31683.2.S1_at--995--1671Chr04:22217345..22217369 (25 bp)
AGCCTGGTCAACCTCTCGGACATGA
LOC_Os04g37730
OsAffx.31683.2.S1_at--600--8591Chr04:22217349..22217373 (25 bp)
TGGTCAACCTCTCGGACATGAGCTC
LOC_Os04g37730
OsAffx.31683.2.S1_at--822--2631Chr04:22217354..22217378 (25 bp)
AACCTCTCGGACATGAGCTCCGAGG
LOC_Os04g37730
OsAffx.31683.2.S1_at--653--951Chr04:22217392..22217416 (25 bp)
AGGACGGCGTGCATTAGGCCTCGCC
LOC_Os04g37730
OsAffx.31683.2.S1_at--306--7331Chr04:22217400..22217424 (25 bp)
GTGCATTAGGCCTCGCCTTCGGCAA
LOC_Os04g37730
OsAffx.31683.2.S1_at--242--6171Chr04:22217473..22217497 (25 bp)
GAGGACGGTGTCATGGGCGCGAGGC
LOC_Os04g37730
OsAffx.31683.2.S1_at--22--7571Chr04:22217521..22217545 (25 bp)
GGGCTGGGACGGCTCGACGAGAAGA
LOC_Os04g37730
OsAffx.31683.2.S1_at--78--2771Chr04:22217542..22217566 (25 bp)
AAGAGGAAAAGATGACGCCGAGTCG
LOC_Os04g37730
OsAffx.31683.2.S1_at--23--2811Chr04:22217550..22217574 (25 bp)
AAGATGACGCCGAGTCGAGCAGAAA
LOC_Os04g37730
Target Sequence 
CGCACGCCCTGGTGATACCGGTGGAGGACGAGGAAGACGACAGCGACGAGGACGACAGGAAGGAGGAGGCCGTGGAGCTC
GAGATGCTGCGCAGCGAGCGGCGCGCCGCGAGGCTGCCGAGGTCGCACTCGACGGGGCACTCGCTGGTCGCGTCGGCGGC
CGCCGCCGCCGAGTCCGGCGACCACGAGCGGTTCACGCTGCGGCTGCCGCAGCACGTGCGGGACGAGGTGCTCCGGTCGC
TCCGCCTCCGCCACGCCGCCAGCCTGGTCAACCTCTCGGACATGAGCTCCGAGGGGAGCTCGAGGGGAGGACGGCGTGCA
TTAGGCCTCGCCTTCGGCAACGGCGGCGGGAGCAGCCACGGCGGCCGCCGGTGGCAGGCGTTCTTGGCGAGGACGGTGTC
ATGGGCGCGAGGCGGAGGCGACGGCTCGGTGCGCAGGGGCTGGGACGGCTCGACGAGAAGAGGAAAAGATGACGCCGAGT
CGAGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31683.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis