Browse Element(s) Details


Os.9584.1.S1_at

Description gb:AK103892.1
DB_XREF= gi:32989101
TID=Os.9584.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150E08, full insert sequence.
FL= gb:AK103892.1 gb:AK061168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1705011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17010NANA4+9287558..9293105retrotransposon protein, putative, unclassified
LOC_Os04g17020OsAffx.19542.3.S1_x_at7/114+9299662..9305134retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17020OsAffx.21754.1.S1_x_at1/114+9299662..9305134retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17030NANA4+9307731..9308663hypothetical protein
LOC_Os04g17040NANA4+9311927..9312495hypothetical protein
LOC_Os04g17050Os.9584.1.S1_at11/114+9316706..9325115expressed protein
LOC_Os04g17064Os.9692.1.S1_at11/114+9327512..9334651C9orf114 protein, putative, expressed
LOC_Os04g17080NANA4+9336702..9337472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17090OsAffx.13843.1.S1_at11/114+9341395..9341763hypothetical protein
LOC_Os04g17100Os.10097.1.S1_at10/114+9343205..9344407farnesylated protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9584.1.S1_at--676--3271Chr04:9324407..9324431 (25 bp)
CAACACATGGATGGAAGCCCTTGAT
LOC_Os04g17050
Os.9584.1.S1_at--467--5291Chr04:9324433..9324570 (25 bp)
GAAGGGATTTTCTAGGTGGCTCCAA
LOC_Os04g17050
Os.9584.1.S1_at--884--7531Chr04:9324561..9324585 (25 bp)
GTGGCTCCAAGCCTAACTTGGCAGA
LOC_Os04g17050
Os.9584.1.S1_at--180--8251Chr04:9324580..9324604 (25 bp)
GGCAGATCTTGCAGTATTTGGTGTT
LOC_Os04g17050
Os.9584.1.S1_at--908--7411Chr04:9324600..9324624 (25 bp)
GTGTTTTGAGACCTATCCGATACTT
LOC_Os04g17050
Os.9584.1.S1_at--79--5971Chr04:9324696..9324720 (25 bp)
GAGAACCATCAAGAATCCAGGAGTA
LOC_Os04g17050
Os.9584.1.S1_at--114--7871Chr04:9324911..9324935 (25 bp)
GGTTTTAAATCATTGTACGGCTGTT
LOC_Os04g17050
Os.9584.1.S1_at--908--6991Chr04:9324925..9324949 (25 bp)
GTACGGCTGTTTGTATCTAACTTTT
LOC_Os04g17050
Os.9584.1.S1_at--651--9791Chr04:9324942..9324966 (25 bp)
TAACTTTTCCAAGTCGCGACGTCAT
LOC_Os04g17050
Os.9584.1.S1_at--37--4031Chr04:9324961..9324985 (25 bp)
CGTCATTATTTCGTTCCTGGTTTAG
LOC_Os04g17050
Os.9584.1.S1_at--984--5171Chr04:9325056..9325080 (25 bp)
GCAAGATTTACATTCTCCATCGATA
LOC_Os04g17050
Target Sequence 
CAACACATGGATGGAAGCCCTTGATGGAAGGGATTTTCTAGGTGGCTCCAAGCCTAACTTGGCAGATCTTGCAGTATTTG
GTGTTTTGAGACCTATCCGATACTTGACAGCTGGAAAAGATATGGTTGAGCATACACAAATTGGTGACTGGTACCAACGT
ATGGAAGATGCAATTGGAGAACCATCAAGAATCCAGGAGTAGAACGAAATTAGTAGAATTTCTTTTTGCCTCTTCAAGTC
TTTGACCATTTCAAACGGAAGGAAGTATATGCTTTAGACATTGAAATTATTGAAGTTTTGCAGAATGTGTGACAATGTAA
TAATGTGACATCATATATTTAGTACACAGAGAATTGAACATGAAAAAGAAGGAACTCGAACTTCCTGTTTTGGTTTTAAA
TCATTGTACGGCTGTTTGTATCTAACTTTTCCAAGTCGCGACGTCATTATTTCGTTCCTGGTTTAGGAGTATATGAGAAA
TTTTTGGGGGGGTCAGTCGTGAAGTATTAACTTGTGATCGTGTTGATGGATAAACTGCAAGATTTACATTCTCCATCGAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis