Browse Element(s) Details


OsAffx.17410.1.S1_x_at

Description tigr:9636.m03911
TID=OsAffx.17410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3879011/11hypothetical protein
LOC_Os08g3876010/11expressed protein
LOC_Os03g342301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17410.1.S1_x_at--160--5872Chr08:24371398..24371422 (25 bp)
GAGCCATCCGCTTGGCGAGATCGCC
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--849--8252Chr08:24371433..24371457 (25 bp)
GGCACCTGCTGCTGCTGAAGCTGTG
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--254--3392Chr08:24371645..24371665 (21 bp)
CAGCGCGCCGCCTGTTGCAGCAGGT
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--1135--5052Chr08:24371674..24371693 (20 bp)
GCAGCAGGTGGTGGGTGCCGTCGTC
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--901--9033Chr08:24371732..24371751 (20 bp)
TGCAGCTCCGGGTCTGCGCCTACTG
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--148--7792Chr08:24371784..24371808 (25 bp)
GGTGCGTGCAGGAGCTCCGGATGAA
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--559--8371Chr08:24388120..24388144 (25 bp)
GGCGTTCGACCTGTCCAAGGAGCCG
LOC_Os08g38790
OsAffx.17410.1.S1_x_at--536--1772Chr08:24371824..24371847 (24 bp)
ACCTGTCCAAGGAGCCGCAGTACGG
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--1133--8932Chr08:24371851..24371875 (25 bp)
TGACGAGGGCCAAGTGCGCCAGCGT
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--982--4132Chr08:24371580..24371923 (25 bp)
CGCTCCGGTGGTGCTACCAGAACAT
LOC_Os08g38760
OsAffx.17410.1.S1_x_at--296--8612Chr08:24371907..24371931 (25 bp)
TGGTGCTACCAGAACATCGTCGCCG
LOC_Os08g38760
Target Sequence 
GAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCC
TCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTC
GCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCCGTCTCGCCGCCCGCGGAGCAGCG
CGCCGCCTGTTGCAGCAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGC
TCCGGGTCTGCGCCTACTGGCGCGCGTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGTGCGTG
CAGGAGCTCCGGATGAAGGGTGCGGCGTTCGACCTGTCCAAGGAGCCGCAGTACGGGGTGACGAGGGCCAAGTGCGCCAG
CGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCCGGTGGTGCTACCAGAACATCGTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17410.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis