Browse Element(s) Details


Os.49777.1.S1_at

Description gb:AK120942.1
DB_XREF= gi:37990565
TID=Os.49777.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037I21, full insert sequence.
FL= gb:AK120942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3881011/11RAFTIN1a protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49777.1.S1_at--769--8371Chr08:24401462..24401486 (25 bp)
GGCGAGTCCAAGTTCTGCGCCACGT
LOC_Os08g38810
Os.49777.1.S1_at--604--4191Chr08:24401686..24401710 (25 bp)
CCCGGCCAGAGCTTACATGGTGGAG
LOC_Os08g38810
Os.49777.1.S1_at--341--3251Chr08:24401773..24401797 (25 bp)
CAACACGTCGCGGTGGAACCCGGAG
LOC_Os08g38810
Os.49777.1.S1_at--50--5451Chr08:24401788..24401812 (25 bp)
GAACCCGGAGCACGTCTCGTTCAAG
LOC_Os08g38810
Os.49777.1.S1_at--971--1911Chr08:24401862..24401886 (25 bp)
ACGGGCACATCGTCTGGGCCAAGAA
LOC_Os08g38810
Os.49777.1.S1_at--545--7551Chr08:24401877..24401901 (25 bp)
GGGCCAAGAACGTGAAGAGCTCGAC
LOC_Os08g38810
Os.49777.1.S1_at--1026--1571Chr08:24401894..24401918 (25 bp)
AGCTCGACGGCGTAGGGCTCCAACT
LOC_Os08g38810
Os.49777.1.S1_at--135--8391Chr08:24401921..24401945 (25 bp)
GGCGACGGCATTGTGAGCTATGCAC
LOC_Os08g38810
Os.49777.1.S1_at--323--10351Chr08:24401963..24401987 (25 bp)
TTTATGTATGTTATTCGTGTCAGCT
LOC_Os08g38810
Os.49777.1.S1_at--631--7451Chr08:24401979..24402003 (25 bp)
GTGTCAGCTGCTGTAATGTCCACAT
LOC_Os08g38810
Os.49777.1.S1_at--1062--7051Chr08:24401991..24402015 (25 bp)
GTAATGTCCACATCTAGAGGGATTA
LOC_Os08g38810
Target Sequence 
GGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGC
CGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCG
CCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTAC
ATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTC
GCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGT
ACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAGGGCTCCAACTCCGGCGACGGCATTGTGAGCTAT
GCACGATGCATTATGCATCTTTTTATGTATGTTATTCGTGTCAGCTGCTGTAATGTCCACATCTAGAGGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis