Browse Element(s) Details


Os.26724.1.S1_at

Description gb:AK102663.1
DB_XREF= gi:32987872
TID=Os.26724.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full insert sequence.
FL= gb:AK102663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3882010/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26724.1.S1_at--1152--8271Chr08:24405389..24405413 (25 bp)
GGCATTTGCAATCATGCTGGCCACT
LOC_Os08g38820
Os.26724.1.S1_at--171--3511Chr08:24405377..24405401 (25 bp)
CATGCTGGCCACTGGAACCATTGGA
LOC_Os08g38820
Os.26724.1.S1_at--765--171Chr08:24405353..24405377 (25 bp)
ATTTTTGACATCATTCTCCTTCGTG
LOC_Os08g38820
Os.26724.1.S1_at--1047--2031Chr08:24405327..24405351 (25 bp)
ACTATCTGTTCTCATCCGTGAAGAT
LOC_Os08g38820
Os.26724.1.S1_at--179--5351Chr08:24405290..24405314 (25 bp)
GAAGATTACGATACTCTCTGGCCCT
LOC_Os08g38820
Os.26724.1.S1_at--998--5471Chr08:24405236..24405260 (25 bp)
GAACTTTCACCATGAGATGCACTGT
LOC_Os08g38820
Os.26724.1.S1_at--916--5571Chr08:24405166..24405190 (25 bp)
GAAAGGTATTCTCCACCTAGCGGAC
LOC_Os08g38820
Os.26724.1.S1_at--150--10371Chr08:24405132..24405156 (25 bp)
TTTTCCTCTATTCCAACCGTTGTTG
LOC_Os08g38820
Os.26724.1.S1_at--839--131Chr08:24405085..24405109 (25 bp)
ATTAATCTAGATACATGCAACCCGG
LOC_Os08g38820
Os.26724.1.S1_at--715--651Chr08:24405071..24405095 (25 bp)
ATGCAACCCGGCTTTGCAAGGGTTT
LOC_Os08g38820
Os.26724.1.S1_at--916--471Chr08:24404843..24404867 (25 bp)
ATCTGTAGTGGGATAGTTTCTCGTC
NONE
Target Sequence 
GGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCG
TGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTT
CACCATGAGATGCACTGTTTANTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACC
TAGCGGACGTAGTCATNTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACAT
GCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCANG
TGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAA
TACGATTGCAAGTACCTGTTTCCTTGGNNATTTTTNTATCANTGTCCAGTNNAAATTTATATTTCCTTATCTGTAGTGGG
ATAGTTTCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis