Browse Element(s) Details


OsAffx.2482.1.S1_at

Description tigr:9630.m00084
TID=OsAffx.2482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0185011/11hypothetical protein
LOC_Os08g387601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01800OsAffx.24926.1.S1_x_at11/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01800OsAffx.24926.2.S1_at2/112+442288..446000Leucine Rich Repeat family protein, expressed
LOC_Os02g01810OsAffx.24054.1.S1_x_at8/112+448105..449790hypothetical protein
LOC_Os02g01810OsAffx.24054.1.S1_at8/112+448105..449790hypothetical protein
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2482.1.S1_at--600--4231Chr02:471557..471581 (25 bp)
CCGATGCGCACAAGGTCAGTAGTGC
LOC_Os02g01850
OsAffx.2482.1.S1_at--854--2891Chr02:471546..471570 (25 bp)
AAGGTCAGTAGTGCCAGAGAGGGAG
LOC_Os02g01850
OsAffx.2482.1.S1_at--1098--3413Chr08:24380645..24380665 (21 bp)
CAGAGAGGGAGAGTGGCGTGAGCGT
LOC_Os08g38760
OsAffx.2482.1.S1_at--151--3952Chr03:2964515..2964627 (25 bp)
CGGCAGAGCCGGGTTTGTTGAATCA
NONE
OsAffx.2482.1.S1_at--267--5052Chr03:2964513..2964625 (25 bp)
GCAGAGCCGGGTTTGTTGAATCACT
NONE
OsAffx.2482.1.S1_at--882--6651Chr02:471329..471353 (25 bp)
GTTGAATCACTAATTTGTGGATGGG
LOC_Os02g01850
OsAffx.2482.1.S1_at--912--3311Chr02:471322..471346 (25 bp)
CACTAATTTGTGGATGGGGCTCATC
LOC_Os02g01850
OsAffx.2482.1.S1_at--1161--7572Chr03:2964476..2964500 (25 bp)
GGGCTCATCATATCACATCCAAATT
NONE
OsAffx.2482.1.S1_at--355--8312Chr03:2964475..2964499 (25 bp)
GGCTCATCATATCACATCCAAATTG
NONE
OsAffx.2482.1.S1_at--719--3573Chr04:11795790..11795814 (25 bp)
CATATCACATCCAAATTGAAATCAA
NONE
OsAffx.2482.1.S1_at--363--3272Chr04:11794999..11795022 (24 bp)
CAAAAGGTTGTTGTACCATCGCTTT
NONE
Target Sequence 
CCGATGCGCACAAGGTCAGTAGTGCCAGAGAGGGAGAGTGGCGTGAGCGTGGTGGTGGCGGCTGTGGCGGCGGCGTCTAC
GGCGAAGCCGGTGGCGTCTGCGGCGGAGCCGGTGGCTGCTGCTGCGGCAGAGCCGGGTTTGTTGAATCACTAATTTGTGG
ATGGGGCTCATCATATCACATCCAAATTGAAATCAAAGACTACATGAAAGAATATCGTAGTGAGCTATGCAAAAGGTTGT
TGTACCATCGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis