Browse Element(s) Details


Os.53775.1.S1_at

Description gb:AK099951.1
DB_XREF= gi:32985160
TID=Os.53775.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123G02, full insert sequence.
FL= gb:AK099951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0189010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53775.1.S1_at--939--1571Chr02:490111..490135 (25 bp)
AGCTGAACGTGTGGGTGGCGGAGTT
LOC_Os02g01890
Os.53775.1.S1_at--367--971Chr02:490381..490405 (25 bp)
AGGAGCTGGATTTCACCACCGTCAT
LOC_Os02g01890
Os.53775.1.S1_at--711--8571Chr02:490387..490411 (25 bp)
TGGATTTCACCACCGTCATGAAGCA
LOC_Os02g01890
Os.53775.1.S1_at--1051--3751Chr02:490449..490473 (25 bp)
CTCTACTAATCGTGCTTCCATGGAT
LOC_Os02g01890
Os.53775.1.S1_at--146--9911Chr02:490452..490476 (25 bp)
TACTAATCGTGCTTCCATGGATGAA
LOC_Os02g01890
Os.53775.1.S1_at--316--3051Chr02:490456..490480 (25 bp)
AATCGTGCTTCCATGGATGAATCAT
LOC_Os02g01890
Os.53775.1.S1_at--25--351Chr02:490490..490514 (25 bp)
ATAACATGCCAATCGATAGTTTTGT
LOC_Os02g01890
Os.53775.1.S1_at--80--9391Chr02:490502..490526 (25 bp)
TCGATAGTTTTGTGATGGTTGTAAA
LOC_Os02g01890
Os.53775.1.S1_at--307--6251Chr02:490515..490539 (25 bp)
GATGGTTGTAAAAGCATGTGTAGTT
LOC_Os02g01890
Os.53775.1.S1_at--549--6811Chr02:490537..490561 (25 bp)
GTTTTATGATACGTACTTTATGTTT
LOC_Os02g01890
Os.53775.1.S1_at--546--791Chr02:490566..490590 (25 bp)
ATGTGTAATACTGTTGATTTTTGAA
NONE
Target Sequence 
AGCTGAACGTGTGGGTGGCGGAGTTGGGGCGGGACGAGGTGGTGTGGACGGCGGCGAGGGAGTTCATGCCGGAGAGGTTC
ATGGACGGCGGCGAGGTGGAGGTGGACGTGACGGGGAGCAGGGAGATAACGATGATGCCGTTCGGCGTGGGGCGGCGGAT
GTGCCCCGGGTACACGGTGGGGACGCTGCACGCGGAGTACCTGGTGGGGAGCCTGGTGAGGGAGCTGGAGTGGCTGCCGG
AGACGGAGGGGGAGGCGGCGGACATGGCGGAGGAGCTGGATTTCACCACCGTCATGAAGCACCCGCTCCGTGCTCGCGTC
CTCCCAAGGCCCTCCTCCCTCTACTAATCGTGCTTCCATGGATGAATCATGCATGAAGAATAACATGCCAATCGATAGTT
TTGTGATGGTTGTAAAAGCATGTGTAGTTTTATGATACGTACTTTATGTTTAAATATGTGTAATACTGTTGATTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis