Browse Element(s) Details


OsAffx.11861.1.S1_at

Description tigr:9630.m00090
TID=OsAffx.11861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0191011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11861.1.S1_at--257--1591Chr02:495695..495719 (25 bp)
AGCTCGAAGAGACAGCCATGGTACA
LOC_Os02g01910
OsAffx.11861.1.S1_at--52--3791Chr02:495697..495721 (25 bp)
CTCGAAGAGACAGCCATGGTACAGC
LOC_Os02g01910
OsAffx.11861.1.S1_at--32--2791Chr02:495701..495725 (25 bp)
AAGAGACAGCCATGGTACAGCCGGA
LOC_Os02g01910
OsAffx.11861.1.S1_at--991--1331Chr02:495702..495726 (25 bp)
AGAGACAGCCATGGTACAGCCGGAA
LOC_Os02g01910
OsAffx.11861.1.S1_at--308--5991Chr02:495703..495727 (25 bp)
GAGACAGCCATGGTACAGCCGGAAG
LOC_Os02g01910
OsAffx.11861.1.S1_at--780--1411Chr02:495704..495728 (25 bp)
AGACAGCCATGGTACAGCCGGAAGA
LOC_Os02g01910
OsAffx.11861.1.S1_at--124--5651Chr02:495705..495729 (25 bp)
GACAGCCATGGTACAGCCGGAAGAG
LOC_Os02g01910
OsAffx.11861.1.S1_at--1109--2151Chr02:495706..495730 (25 bp)
ACAGCCATGGTACAGCCGGAAGAGC
LOC_Os02g01910
OsAffx.11861.1.S1_at--160--1691Chr02:495708..495732 (25 bp)
AGCCATGGTACAGCCGGAAGAGCAC
LOC_Os02g01910
OsAffx.11861.1.S1_at--545--8312Chr11:5118011..5118030 (20 bp)
GGCTACGACACGAGGAGCATCTCCA
NONE
OsAffx.11861.1.S1_at--1092--4071Chr02:496021..496045 (25 bp)
CGACGCGTTCGAGGTTCGAGGGATG
LOC_Os02g01910
Target Sequence 
AGCTCGAAGAGACAGCCATGGTACAGCCGGAAGAGCACCGCGCCGCTGCTCTTGGCGAAGCACTCGAGCCGGACCTCCTC
GTCCACTGTCAATGGCGGCGGCATCTCCTCCGGCGCGGCTGACTCCACCACCCTCGCCAGGTCCACCGCGGCGCGGCACG
TCCACCTCGCCGCGCCGTCGTCCTTCGACAACGACGACGACAGCGGCCGCCTCGCTGCGCTGTCGTCCTTCGACGACAAC
GATCGATATCTCGTGGCGCCTCGCCACGGCCAGGCCGAGCGTCCCGTCCGGCTACGACACGAGGAGCATCTCCACGCTCG
GCTTGGCGACGCGTTCGAGGTTCGAGGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis