Browse Element(s) Details


Os.57126.1.S1_at

Description gb:AK110964.1
DB_XREF= gi:32996173
TID=Os.57126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B04, full insert sequence.
FL= gb:AK110964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3876011/11expressed protein
LOC_Os02g018503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os08g38720Os.50196.1.S1_x_at11/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38720Os.50196.2.S1_x_at3/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38730NANA8+24359580..24360044expressed protein
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57126.1.S1_at--219--432Chr08:24371958..24371982 (25 bp)
ATCTTGTGCTCGTAGGCCGGAGGCT
LOC_Os08g38760
Os.57126.1.S1_at--423--4594Chr08:24381486..24381510 (25 bp)
GCGAATCCGATTTCATGCATGTTTC
LOC_Os08g38760
Os.57126.1.S1_at--1055--5593Chr08:24381517..24381541 (25 bp)
GACAAGGTGCTCTCCAAGGTTGAAC
LOC_Os08g38760
Os.57126.1.S1_at--376--2912Chr08:24381532..24381556 (25 bp)
AAGGTTGAACAAGGGCTCAGCTTCA
LOC_Os08g38760
Os.57126.1.S1_at--7--5613Chr08:24381566..24381590 (25 bp)
GACAAATCTAACACTGCTCATTCCA
LOC_Os08g38760
Os.57126.1.S1_at--1092--1951Chr08:24381617..24381641 (25 bp)
ACTGTACATCGCAATGGTCCTATGG
LOC_Os08g38760
Os.57126.1.S1_at--541--1853Chr08:24381862..24381886 (25 bp)
ACGTCGTTTCTAAGCTTCAGAACCA
LOC_Os08g38760
Os.57126.1.S1_at--357--7211Chr08:24381920..24381944 (25 bp)
GTGCTTAGTCCATTTTTGTAGCCCC
LOC_Os08g38760
Os.57126.1.S1_at--312--9491Chr08:24381954..24381978 (25 bp)
TCTGCCCCAACCAACATATGTAACA
LOC_Os08g38760
Os.57126.1.S1_at--1037--7532Chr08:24382002..24382026 (25 bp)
GTGGCTACTGTTTTTGTCTTAAACT
LOC_Os08g38760
Os.57126.1.S1_at--1038--7533Chr08:24382073..24382097 (25 bp)
GTGGCTACTGTTTTCATGTACATAT
LOC_Os08g38760
Target Sequence 
ATCTTGTGCTCGTAGGCCGGAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGTT
TCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGACAAATCTAACACTGCTCATTC
CAACAAGAAGACATGTGCAATAAAACCCACTGTACATCGCAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAG
AGTTGAAACTAGACAATGAAAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTGC
TTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGGTTCAAGCAGTGTTGGATGTGT
GCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCCCAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTAT
GTGGCTACTGTTTTTGTCTTAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTACT
GTTTTCATGTACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis