Browse Element(s) Details


Os.50196.1.S1_x_at

Description gb:AK103187.1
DB_XREF= gi:32988396
TID=Os.50196.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121L24, full insert sequence.
FL= gb:AK103187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3872011/11Cytochrome oxidase assembly protein, expressed
LOC_Os02g531201/11separase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os08g38720Os.50196.1.S1_x_at11/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38720Os.50196.2.S1_x_at3/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38730NANA8+24359580..24360044expressed protein
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50196.1.S1_x_at--169--4991Chr08:24352527..24352551 (25 bp)
GCATCCAGCAATCAAGTCTCTTATC
LOC_Os08g38720
Os.50196.1.S1_x_at--484--7151Chr08:24352542..24352566 (25 bp)
GTCTCTTATCGGAAGCACGCTTGGA
LOC_Os08g38720
Os.50196.1.S1_x_at--197--2971Chr08:24352566..24352704 (25 bp)
AATGGCTGCCCTTCAGGTTACATTG
LOC_Os08g38720
Os.50196.1.S1_x_at--1130--10772Chr08:24352720..24352744 (25 bp)
TTGATGTATGTTCCTACTTCCTTGG
LOC_Os08g38720
Os.50196.1.S1_x_at--642--5631Chr08:24352770..24352794 (25 bp)
GACACTACTGTCACTGATGATCCTT
LOC_Os08g38720
Os.50196.1.S1_x_at--108--10311Chr08:24352915..24352939 (25 bp)
TTTCCCGTCTTCTTATAGCTGACAT
LOC_Os08g38720
Os.50196.1.S1_x_at--709--10711Chr08:24352953..24352977 (25 bp)
TTGCACTACATTATCACCGTACTCA
LOC_Os08g38720
Os.50196.1.S1_x_at--326--4551Chr08:24353012..24353036 (25 bp)
GCCCTCATAATTTTCTAGTGCCAAA
LOC_Os08g38720
Os.50196.1.S1_x_at--960--2751Chr08:24353054..24353078 (25 bp)
AAGACTTCTTTGGACATGCTGCATT
LOC_Os08g38720
Os.50196.1.S1_x_at--30--9071Chr08:24353093..24353117 (25 bp)
TGCATTTTTGACATGCTGTCCGCAG
LOC_Os08g38720
Os.50196.1.S1_x_at--417--9271Chr08:24353111..24353135 (25 bp)
TCCGCAGCTGTGCACTCTGATTAGA
LOC_Os08g38720
Target Sequence 
GCATCCAGCAATCAAGTCTCTTATCGGAAGCACGCTTGGAATGGCTGCCCTTCAGGTTACATTGGGAATATCTACACTTT
TGATGTATGTTCCTACTTCCTTGGGCTCAGCTCATCAAGCTGGGGCATTGACACTACTGTCACTGATGATCCTTCTCACC
CACACTTTAAGAAGACCGTCACCAGCCCTTCTGAAGTCACTTGCATCAGCAGTGAAATCAACCTGACACCNGTGTCATGA
AATTTTCCTTCAGGCACAGTAGACTGTTTGATATNTTTCCCGTCTTCTTATAGCTGACATGCGGTCGCCTCCTTTGCACT
ACATTATCACCGTACTCATTTGGCCCAAAAGCATTCAATTCTTGAATAAGGGGCCCTCATAATTTTCTAGTGCCAAATAT
TACGTACCTTTTCCAAGACTTCTTTGGACATGCTGCATTTTGTCAGGCAATATTGCATTTTTGACATGCTGTCCGCAGCT
GTGCACTCTGATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50196.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis