Browse Element(s) Details


Os.33471.1.A1_at

Description gb:AK100472.1
DB_XREF= gi:32985681
TID=Os.33471.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.33471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093I21, full insert sequence.
FL= gb:AK100472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3870011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os08g38720Os.50196.1.S1_x_at11/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38720Os.50196.2.S1_x_at3/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38730NANA8+24359580..24360044expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33471.1.A1_at--961--871Chr08:24334456..24334480 (25 bp)
AGGCCTTCCTCAACTACATTTATGG
LOC_Os08g38700
Os.33471.1.A1_at--398--10351Chr08:24334474..24334498 (25 bp)
TTTATGGTGACCTACGCAGCGAAGA
LOC_Os08g38700
Os.33471.1.A1_at--978--5351Chr08:24334494..24334518 (25 bp)
GAAGAGTTCCTCACCCACAGGTTAG
LOC_Os08g38700
Os.33471.1.A1_at--1108--4811Chr08:24334518..24334542 (25 bp)
GCTCTTCTCAGAGCTGCCGATAAGT
LOC_Os08g38700
Os.33471.1.A1_at--190--4991Chr08:24334566..24334590 (25 bp)
GCATGCCATGAGAGCCTGTTAGAGG
LOC_Os08g38700
Os.33471.1.A1_at--1073--9371Chr08:24334612..24334636 (25 bp)
TCGAGAGGCTTCAGATGGCGCACTT
LOC_Os08g38700
Os.33471.1.A1_at--491--871Chr08:24334626..24334650 (25 bp)
ATGGCGCACTTGTACCGATTGCAAA
LOC_Os08g38700
Os.33471.1.A1_at--1104--7991Chr08:24334658..24334682 (25 bp)
GGATGGCTGCTTGAGATTTCTGGTA
LOC_Os08g38700
Os.33471.1.A1_at--588--2891Chr08:24334719..24334743 (25 bp)
AAGGTGTTCCTCCAGACAGCAGACA
LOC_Os08g38700
Os.33471.1.A1_at--763--7891Chr08:24334826..24334850 (25 bp)
GGTTCAGAAGCATTCTTTCCAGAAT
LOC_Os08g38700
Os.33471.1.A1_at--1049--6891Chr08:24334975..24334999 (25 bp)
GTATCCGACTCCACGTATTGTAACA
LOC_Os08g38700
Target Sequence 
AGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCC
GATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGA
GAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGG
TGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATT
CTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTG
CTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGA
TTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33471.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis