Browse Element(s) Details


OsAffx.6074.1.S1_at

Description tigr:9636.m03898
TID=OsAffx.6074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3867011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6074.1.S1_at--221--5011Chr08:24310154..24310176 (23 bp)
GCAGGTTTCAGCCTCCGCCGCAGAT
LOC_Os08g38670
OsAffx.6074.1.S1_at--515--2471Chr08:24310218..24310242 (25 bp)
AACACTAGCTCCTAAGGAATCCTAC
LOC_Os08g38670
OsAffx.6074.1.S1_at--267--8211Chr08:24310233..24310257 (25 bp)
GGAATCCTACTCTAATCCTAAGCAA
LOC_Os08g38670
OsAffx.6074.1.S1_at--529--9751Chr08:24310245..24310269 (25 bp)
TAATCCTAAGCAAATGGCCTCCTCT
LOC_Os08g38670
OsAffx.6074.1.S1_at--31--2311Chr08:24310256..24310280 (25 bp)
AAATGGCCTCCTCTGATAAGAAAAG
LOC_Os08g38670
OsAffx.6074.1.S1_at--1123--2771Chr08:24310278..24310302 (25 bp)
AAGAGCAGAGATTCCATCTAGGAGT
LOC_Os08g38670
OsAffx.6074.1.S1_at--885--6571Chr08:24310287..24310311 (25 bp)
GATTCCATCTAGGAGTGGCAAAGCT
LOC_Os08g38670
OsAffx.6074.1.S1_at--650--7531Chr08:24310301..24310325 (25 bp)
GTGGCAAAGCTGAAAGTCACTTAGG
LOC_Os08g38670
OsAffx.6074.1.S1_at--1142--2831Chr08:24310314..24310338 (25 bp)
AAGTCACTTAGGCTCGTCTGATGGA
LOC_Os08g38670
OsAffx.6074.1.S1_at--99--911Chr08:24310323..24310347 (25 bp)
AGGCTCGTCTGATGGAATTGGTGAA
LOC_Os08g38670
OsAffx.6074.1.S1_at--315--5371Chr08:24310345..24310369 (25 bp)
GAAGAACGGTGTTCTTTTAGCCAAG
LOC_Os08g38670
Target Sequence 
GCAGGTTTCAGCCTCCGCCGCAGATTCGCATCACTCCACTACTCCTATTCACCGCATTCCTCTCCGAACACTAGCTCCTA
AGGAATCCTACTCTAATCCTAAGCAAATGGCCTCCTCTGATAAGAAAAGAGCAGAGATTCCATCTAGGAGTGGCAAAGCT
GAAAGTCACTTAGGCTCGTCTGATGGAATTGGTGAAGAACGGTGTTCTTTTAGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis