Browse Element(s) Details


OsAffx.6073.1.S1_at

Description tigr:9636.m03895
TID=OsAffx.6073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3865011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38610OsAffx.6072.1.S1_at10/118+24269343..24273295pentatricopeptide, putative
LOC_Os08g38620Os.14799.1.S1_at11/118+24274864..24279963expressed protein
LOC_Os08g38630OsAffx.17407.1.S1_at11/118+24281436..24282002hypothetical protein
LOC_Os08g38640NANA8+24283586..24287882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38650OsAffx.6073.1.S1_at11/118+24293566..24294862hypothetical protein
LOC_Os08g38660NANA8+24295998..24301351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g38670OsAffx.6074.1.S1_at11/118+24309520..24310401hypothetical protein
LOC_Os08g38680OsAffx.6075.1.S1_at10/118+24310867..24314025hypothetical protein
LOC_Os08g38690OsAffx.17408.1.S1_at10/118+24314988..24324204expressed protein
LOC_Os08g38690Os.12614.1.A1_at1/118+24314988..24324204expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6073.1.S1_at--20--5051Chr08:24294069..24294093 (25 bp)
GCAGAGTACATCATCCAGGGCACAC
LOC_Os08g38650
OsAffx.6073.1.S1_at--16--8251Chr08:24294036..24294060 (25 bp)
GGCACACTGCCAACCGGTGATGAAT
LOC_Os08g38650
OsAffx.6073.1.S1_at--889--9631Chr08:24294011..24294035 (25 bp)
TCAGGACGATGCTTCCCGATGAAAT
LOC_Os08g38650
OsAffx.6073.1.S1_at--297--5451Chr08:24293954..24293978 (25 bp)
GAACTGTGGCATCAACCCATATGGT
LOC_Os08g38650
OsAffx.6073.1.S1_at--531--3751Chr08:24293928..24293952 (25 bp)
CTCTTCATGGGCTTTGGCTACAGGA
LOC_Os08g38650
OsAffx.6073.1.S1_at--961--4511Chr08:24293897..24293921 (25 bp)
GCCCATACTTGGTGTTCCTTAACAG
LOC_Os08g38650
OsAffx.6073.1.S1_at--484--8271Chr08:24293841..24293865 (25 bp)
GGCAGGGTGTACTTTGATCAGATCT
LOC_Os08g38650
OsAffx.6073.1.S1_at--272--9951Chr08:24293817..24293841 (25 bp)
TACGCTGAGCTGTTTTATGCACTGA
LOC_Os08g38650
OsAffx.6073.1.S1_at--889--8851Chr08:24293779..24293803 (25 bp)
TGATGCCTCAGTACGGACAAGTCAT
LOC_Os08g38650
OsAffx.6073.1.S1_at--322--9451Chr08:24293727..24293751 (25 bp)
TCGGCGACCATTCAGCAGTTTACAC
LOC_Os08g38650
OsAffx.6073.1.S1_at--445--1211Chr08:24293711..24293735 (25 bp)
AGTTTACACTGTCTTCATCTGCTAG
LOC_Os08g38650
Target Sequence 
GCAGAGTACATCATCCAGGGCACACCTCTACTTGGCACACTGCCAACCGGTGATGAATTCAGGACGATGCTTCCCGATGA
AATATTTGAGTTTCGTCGGGGACTTTTGCCAGCTGGAACTGTGGCATCAACCCATATGGTTCTCTTCATGGGCTTTGGCT
ACAGGAATGGCCGCCCATACTTGGTGTTCCTTAACAGCAACGGCAAGAGCTTCGGAGACGAGGGTTTGGGCAGGGTGTAC
TTTGATCAGATCTACGCTGAGCTGTTTTATGCACTGAATGCCAGAGCCCCTGATGCCTCAGTACGGACAAGTCATCATAA
TGAAGATGCCAGCGCCTCTACCTCGGCGACCATTCAGCAGTTTACACTGTCTTCATCTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis