Browse Element(s) Details


OsAffx.6079.1.S1_at

Description tigr:9636.m03938
TID=OsAffx.6079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3900011/11expressed protein
LOC_Os08g388001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g270001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38970OsAffx.6144.1.S1_at11/118+24501144..24504104expressed protein
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6079.1.S1_at--204--10811Chr08:24524862..24524886 (25 bp)
TTGTCAGGTCCTAAGCGAGGCATCT
LOC_Os08g39000
OsAffx.6079.1.S1_at--940--8271Chr08:24524880..24524904 (25 bp)
GGCATCTCGCTGGAAAATCCTGCTG
LOC_Os08g39000
OsAffx.6079.1.S1_at--356--3031Chr08:24524895..24524919 (25 bp)
AATCCTGCTGTGATCGAGTACGACC
LOC_Os08g39000
OsAffx.6079.1.S1_at--668--2311Chr08:24524945..24524969 (25 bp)
AAAGGACGACTTGCAGCTCATCGAC
LOC_Os08g39000
OsAffx.6079.1.S1_at--695--7511Chr08:24525045..24525069 (25 bp)
GTGGATATCAGCTTAGCCCTTCTTC
LOC_Os08g39000
OsAffx.6079.1.S1_at--879--571Chr08:24525134..24525158 (25 bp)
ATCCATCTCTTGCTTTGTCAGTCAA
LOC_Os08g39000
OsAffx.6079.1.S1_at--1088--2253Chr08:24525169..24525193 (25 bp)
AAATCAAGCTCTTCGATGGCACCAT
LOC_Os08g39000
OsAffx.6079.1.S1_at--227--1431Chr08:24525213..24525237 (25 bp)
AGAAACTTCGTGGTTGCTGTGCAGC
LOC_Os08g39000
OsAffx.6079.1.S1_at--418--3831Chr08:24525237..24525261 (25 bp)
CTGCGCACTGTGTTGATTCTTGATT
LOC_Os08g39000
OsAffx.6079.1.S1_at--748--2931Chr08:24525333..24525357 (25 bp)
AAGGCTACCACTCATGCAGGTTCTA
LOC_Os08g39000
OsAffx.6079.1.S1_at--770--2571Chr08:24525361..24525385 (25 bp)
AACGGATCCAACATTATTTCGCCAA
LOC_Os08g39000
Target Sequence 
TTGTCAGGTCCTAAGCGAGGCATCTCGCTGGAAAATCCTGCTGTGATCGAGTACGACCTCAAGATCAAGAAAGGAGAGGA
CGAAAAGGACGACTTGCAGCTCATCGACGGGGTGGCCGCCTTCAGCGACCTTACACCATTTCATGGGGTGTATAGTCGGC
GGATCCATGGCATCCATGGCGCCGTGGATATCAGCTTAGCCCTTCTTCGCAATGGGAAGGAAAGCACCATACAAATTAAG
ATTCCGAAGCTAATTCATGGCGGCATACACTTATCCATCTCTTGCTTTGTCAGTCAAATACCTGAGGAAATCAAGCTCTT
CGATGGCACCATTGTTAATCCATCAAAACTCAGAAACTTCGTGGTTGCTGTGCAGCTGCGCACTGTGTTGATTCTTGATT
TCAAGATTACGCCTGTGGTAGCGGCCGCCGGCGAAAATGGATCCAATCAAATCCATCGCTATTGTGCCTTCAAGGCTACC
ACTCATGCAGGTTCTATTCAACGGATCCAACATTATTTCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis