Browse Element(s) Details


Os.21836.1.S1_at

Description gb:AK100691.1
DB_XREF= gi:32985900
TID=Os.21836.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0038D11.18 (P0038D11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114F24, full insert sequence.
FL= gb:AK100691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4596011/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g390101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein
LOC_Os01g45990Os.50245.1.S1_x_at11/111+26446568..26453013Potassium channel AKT6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21836.1.S1_at--648--1271Chr01:26437341..26437365 (25 bp)
AGATCAGTGGAAGACCTCCCTGTTC
LOC_Os01g45960
Os.21836.1.S1_at--359--3871Chr01:26437360..26437384 (25 bp)
CTGTTCTGGTTGTAGCAGGCTCTGA
LOC_Os01g45960
Os.21836.1.S1_at--134--3871Chr01:26437381..26437405 (25 bp)
CTGAGGATGCTCTTGTTTCTTCGAA
LOC_Os01g45960
Os.21836.1.S1_at--1114--191Chr01:26437605..26437629 (25 bp)
ATTTGCCACATGAGGAGTGTCCCAA
LOC_Os01g45960
Os.21836.1.S1_at--739--8311Chr01:26437642..26437666 (25 bp)
GGCTCTTTCTCCATTCATATCAGGA
LOC_Os01g45960
Os.21836.1.S1_at--476--7151Chr01:26437736..26437760 (25 bp)
GTCTTTCTGTCCTCTACACTGAGTA
LOC_Os01g45960
Os.21836.1.S1_at--909--7331Chr01:26437800..26437824 (25 bp)
GTGCAGTAGTGGAGCCTGACCCAAA
LOC_Os01g45960
Os.21836.1.S1_at--473--9732Chr01:26437828..26437852 (25 bp)
TCAAGGGTTCCTAGAGCTCCTCTAA
LOC_Os01g45960
Os.21836.1.S1_at--281--3811Chr01:26437844..26437868 (25 bp)
CTCCTCTAATTTTTTGCCCCATATA
LOC_Os01g45960
Os.21836.1.S1_at--1081--8672Chr01:26437926..26437950 (25 bp)
TGTGTTCAGTTCATGTCTACTCCAG
LOC_Os01g45960
Os.21836.1.S1_at--757--2594Chr10:17630335..17630359 (25 bp)
AACGCTACGGTGCAACTCTATTTGT
NONE
Target Sequence 
AGATCAGTGGAAGACCTCCCTGTTCTGGTTGTAGCAGGCTCTGAGGATGCTCTTGTTTCTTCGAAGTCAACGCAAGTAAT
GGCTTCAAGGCTTGTAAATTCTAGGCTGGTAACGATATCAAATTGTGGGCATTTGCCACATGAGGAGTGTCCCAAGGCAT
TGCTTTCGGCTCTTTCTCCATTCATATCAGGACTGGTGTCATCAGATGATTCATTGCAAAGATTGTAGCATACTAGTTCT
TTTCGTTTTGCCTTTTGCCCTGTCTTTCTGTCCTCTACACTGAGTAGATCTCTCTAGTTGGTGTGAGTTTGTGTGAGCCA
ATGTAGTGCAGTAGTGGAGCCTGACCCAAAATCTCAAGGGTTCCTAGAGCTCCTCTAATTTTTTGCCCCATATAATGATA
CCTCCGAATGATTTCAATTAAGCAAGTTGAATCTGTACAGCACAGGCTTGCTGTGTTCAGTTCATGTCTACTCCAGCTCC
AGCTGTCATATATCAGCTAACTACTGACTACTAGTAATATGCCCGTGCTAAACGCTACGGTGCAACTCTATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis