Browse Element(s) Details


Os.12625.5.S1_at

Description gb:AK069624.1
DB_XREF= gi:32979648
TID=Os.12625.5
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plastidic ATPADP-transporter (P0707D10.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025F15, full insert sequence.
FL= gb:AK102610.1 gb:AK069624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4591011/11Plastidic ATP/ADP-transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005471molecular_functionATP:ADP antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12625.5.S1_at--706--1151Chr01:26405413..26405437 (25 bp)
AGTCTGGTGGAGCTCTTATTCAACA
LOC_Os01g45910
Os.12625.5.S1_at--542--6371Chr01:26405382..26405406 (25 bp)
GATCCTTACATTTGGCTCTTTAGCT
LOC_Os01g45910
Os.12625.5.S1_at--97--4331Chr01:26405343..26405367 (25 bp)
CCTTGGTGGCATACTGTTGGTGATT
LOC_Os01g45910
Os.12625.5.S1_at--261--6631Chr01:26405328..26405352 (25 bp)
GTTGGTGATTGTTCTAGCATGGCTA
LOC_Os01g45910
Os.12625.5.S1_at--793--10091Chr01:26405305..26405329 (25 bp)
TAGGCGCGGCAAGTTCACTAGACAA
LOC_Os01g45910
Os.12625.5.S1_at--513--2731Chr01:26405282..26405306 (25 bp)
AAGCAATTCTCTAGCTTGGCTAAGG
LOC_Os01g45910
Os.12625.5.S1_at--389--1471Chr01:26405227..26405251 (25 bp)
AGAAGGTAGATCCTTCCCTGCTCAA
LOC_Os01g45910
Os.12625.5.S1_at--217--7731Chr01:26405181..26405205 (25 bp)
GGTGGAGCACACAAACGGCACTATA
LOC_Os01g45910
Os.12625.5.S1_at--44--5891Chr01:26405154..26405178 (25 bp)
GAGCGAAGCTACTGCAACTGAGAGT
LOC_Os01g45910
Os.12625.5.S1_at--42--2451Chr01:26405027..26405051 (25 bp)
AACAATTCACGGTTTCTCAAGTTTG
LOC_Os01g45910
Os.12625.5.S1_at--527--2691Chr01:26404985..26405009 (25 bp)
AAGCTGCCTGTTTATTTTGTTTGTA
LOC_Os01g45910
Target Sequence 
AGTCTGGTGGAGCTCTTATTCAACAGTTCATGATCCTTACATTTGGCTCTTTAGCTAACTCCACCCCCTACCTTGGTGGC
ATACTGTTGGTGATTGTTCTAGCATGGCTAGGCGCGGCAAGTTCACTAGACAAGCAATTCTCTAGCTTGGCTAAGGAAGA
TCTCAAAAGGGATATGTCTGCAAAAGAGAAGGTAGATCCTTCCCTGCTCAAGGCTCCTGAGGCTGATGTATTGGTGGAGC
ACACAAACGGCACTATAGAGAGCGAAGCTACTGCAACTGAGAGTTCACCATCAAACTCATCTCCAAGTAATTAGATTCAT
CTTTCTTTGACAAAGTCAATCGATAGGTAGGAGAATGATTGCAGTGGGTAGAAATAATGGTGATGAAACAATTCACGGTT
TCTCAAGTTTGTAACAGTGCGCAGAATCAAGCTGCCTGTTTATTTTGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12625.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis