Browse Element(s) Details


OsAffx.2244.1.S1_at

Description tigr:9629.m04388
TID=OsAffx.2244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4587011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2244.1.S1_at--62--4151Chr01:26383899..26383923 (25 bp)
CGCGGCGCGCGGTACACCTGTGTAC
LOC_Os01g45870
OsAffx.2244.1.S1_at--277--4711Chr01:26383898..26383922 (25 bp)
GCGGCGCGCGGTACACCTGTGTACT
LOC_Os01g45870
OsAffx.2244.1.S1_at--171--8411Chr01:26383896..26383920 (25 bp)
GGCGCGCGGTACACCTGTGTACTCA
LOC_Os01g45870
OsAffx.2244.1.S1_at--385--4571Chr01:26383895..26383919 (25 bp)
GCGCGCGGTACACCTGTGTACTCAG
LOC_Os01g45870
OsAffx.2244.1.S1_at--384--4571Chr01:26383893..26383917 (25 bp)
GCGCGGTACACCTGTGTACTCAGGT
LOC_Os01g45870
OsAffx.2244.1.S1_at--696--4671Chr01:26383891..26383915 (25 bp)
GCGGTACACCTGTGTACTCAGGTCT
LOC_Os01g45870
OsAffx.2244.1.S1_at--261--3971Chr01:26383890..26383914 (25 bp)
CGGTACACCTGTGTACTCAGGTCTG
LOC_Os01g45870
OsAffx.2244.1.S1_at--21--7851Chr01:26383889..26383913 (25 bp)
GGTACACCTGTGTACTCAGGTCTGG
LOC_Os01g45870
OsAffx.2244.1.S1_at--734--7031Chr01:26383888..26383912 (25 bp)
GTACACCTGTGTACTCAGGTCTGGA
LOC_Os01g45870
OsAffx.2244.1.S1_at--51--9871Chr01:26383887..26383911 (25 bp)
TACACCTGTGTACTCAGGTCTGGAC
LOC_Os01g45870
OsAffx.2244.1.S1_at--452--2171Chr01:26383886..26383910 (25 bp)
ACACCTGTGTACTCAGGTCTGGACT
LOC_Os01g45870
Target Sequence 
CGCGGCGCGCGGTACACCTGTGTACTCAGGTCTGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis