Browse Element(s) Details


Os.55689.1.S1_x_at

Description gb:AK108570.1
DB_XREF= gi:32993779
TID=Os.55689.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D11, full insert sequence.
FL= gb:AK108570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4584010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55689.1.S1_x_at--681--4491NONE
GCCGGTGGGTGTACAATCAAGCCTT
NONE
Os.55689.1.S1_x_at--329--10851Chr01:26365365..26365389 (25 bp)
TTGGTGTTGTCCCTGATACTGAGCA
LOC_Os01g45840
Os.55689.1.S1_x_at--667--1391Chr01:26365432..26365456 (25 bp)
AGACGAGGCATTTCACTTTATCAAG
LOC_Os01g45840
Os.55689.1.S1_x_at--1046--7951Chr01:26365490..26365514 (25 bp)
GGATCACTTCTTGCTGCTTGTAGAG
LOC_Os01g45840
Os.55689.1.S1_x_at--731--6111Chr01:26365584..26365608 (25 bp)
GAGTGCATGTGCTCGTTTCAAACTT
LOC_Os01g45840
Os.55689.1.S1_x_at--204--1011Chr01:26365704..26365728 (25 bp)
AGGTATAAACCTTCAGAGTTCAGAC
LOC_Os01g45840
Os.55689.1.S1_x_at--469--6751Chr01:26365721..26365745 (25 bp)
GTTCAGACTATGTAAACTTCACTTG
LOC_Os01g45840
Os.55689.1.S1_x_at--840--5231Chr01:26365745..26365769 (25 bp)
GAATACATGATCTACCATTGAGTAA
LOC_Os01g45840
Os.55689.1.S1_x_at--1077--10371Chr01:26365868..26365892 (25 bp)
TTTTACAAGATGTCAGGCATGGCAT
LOC_Os01g45840
Os.55689.1.S1_x_at--1058--8211Chr01:26365883..26365907 (25 bp)
GGCATGGCATGACCAAACTTCACTA
LOC_Os01g45840
Os.55689.1.S1_x_at--635--2511Chr01:26365898..26365922 (25 bp)
AACTTCACTATCTACAGGACATGAT
LOC_Os01g45840
Target Sequence 
GCCGGTGGGTGTACAATCAAGCCTTGGTGTTGTCCCTGATACTGAGCACTATGGTTGCATAGTAGACCTCCTGGGGAGAG
CTGGTATGTTAGACGAGGCATTTCACTTTATCAAGAAGATGCCAATAGAACCCAATCCTGTAATTTGGGGATCACTTCTT
GCTGCTTGTAGAGTTCATCACAGAATGGATCTAGGAAAGGTAATTGGACAGCATATCGTTAACGTAGCTCCTAATGATGT
GGGAGTGCATGTGCTCGTTTCAAACTTACATGCTGAAGAAAGTCAATGGGATGATGTCGAACATGTTAGAGGACTAATGG
GAAGCAGAGGTATAGAGAAGACACCTGGACACAGTTCTGTCCAGGTATAAACCTTCAGAGTTCAGACTATGTAAACTTCA
CTTGAATACATGATCTACCATTGAGTAAAATATAGAAAGTTTGCAGGAGCAAATGTAAGTATGTAACTATTCAGTTTCAG
TTTTCTTCAAAAAAAATAAATAAAGAAGTAAACTATTCAGTTTCAGTTTTACAAGATGTCAGGCATGGCATGACCAAACT
TCACTATCTACAGGACATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55689.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis