Browse Element(s) Details


OsAffx.2243.1.S1_at

Description tigr:9629.m04385
TID=OsAffx.2243.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4584011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2243.1.S1_at--637--8331Chr01:26365118..26365142 (25 bp)
GGCTGCATTGACACTGCTTCTGAAA
LOC_Os01g45840
OsAffx.2243.1.S1_at--521--3011Chr01:26365153..26365177 (25 bp)
AATGCAGCATAAGCAGACCCTCTCA
LOC_Os01g45840
OsAffx.2243.1.S1_at--952--2711Chr01:26365163..26365187 (25 bp)
AAGCAGACCCTCTCATGGAATGCCA
LOC_Os01g45840
OsAffx.2243.1.S1_at--1008--11Chr01:26365190..26365214 (25 bp)
ATTGGAGGTCTTGCAAGCAATGGTT
LOC_Os01g45840
OsAffx.2243.1.S1_at--292--9851Chr01:26365257..26365281 (25 bp)
TACAGGATCCAAAACCGGACGGCAT
LOC_Os01g45840
OsAffx.2243.1.S1_at--429--4231Chr01:26365271..26365295 (25 bp)
CCGGACGGCATTACTCTTAAGGCAG
LOC_Os01g45840
OsAffx.2243.1.S1_at--714--2931Chr01:26365289..26365313 (25 bp)
AAGGCAGTTCTTGGTGCCTGTGCAC
LOC_Os01g45840
OsAffx.2243.1.S1_at--524--7291Chr01:26365302..26365326 (25 bp)
GTGCCTGTGCACATGTAGGAATGGT
LOC_Os01g45840
OsAffx.2243.1.S1_at--681--7851Chr01:26365324..26365348 (25 bp)
GGTTGATGAAGGTCTCCGTTACTTC
LOC_Os01g45840
OsAffx.2243.1.S1_at--601--1031Chr01:26365333..26365357 (25 bp)
AGGTCTCCGTTACTTCTATTTGATG
LOC_Os01g45840
OsAffx.2243.1.S1_at--469--9551Chr01:26365347..26365371 (25 bp)
TCTATTTGATGTCAAGCCTTGGTGT
LOC_Os01g45840
Target Sequence 
GGCTGCATTGACACTGCTTCTGAAATATTTAGAAAAATGCAGCATAAGCAGACCCTCTCATGGAATGCCATGATTGGAGG
TCTTGCAAGCAATGGTTATGGAAAAGAAGCAGTGGAGCTCTTTGATCAAATGCTGGAGTTACAGGATCCAAAACCGGACG
GCATTACTCTTAAGGCAGTTCTTGGTGCCTGTGCACATGTAGGAATGGTTGATGAAGGTCTCCGTTACTTCTATTTGATG
TCAAGCCTTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis