Browse Element(s) Details


Os.33218.1.S1_at

Description gb:AK101336.1
DB_XREF= gi:32986545
TID=Os.33218.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.34 (P0707D10.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034J09, full insert sequence.
FL= gb:AK101336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4588011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33218.1.S1_at--153--9811Chr01:26393450..26393474 (25 bp)
TAACAAGGGAATTTGGATAACTGCC
LOC_Os01g45880
Os.33218.1.S1_at--578--8571Chr01:26393437..26393461 (25 bp)
TGGATAACTGCCAAACCTAAAAGTG
LOC_Os01g45880
Os.33218.1.S1_at--269--2532Chr12:21983597..21983617 (21 bp)
AACTGCCAAACCTAAAAGTGGCAAT
NONE
Os.33218.1.S1_at--623--5191Chr01:26393412..26393436 (25 bp)
GCAATTAGTTAAATTCCCCTATAAT
LOC_Os01g45880
Os.33218.1.S1_at--1139--4251Chr01:26393395..26393419 (25 bp)
CCTATAATTTGTACCCTTCCGCATA
LOC_Os01g45880
Os.33218.1.S1_at--975--9291Chr01:26393378..26393402 (25 bp)
TCCGCATACTAACTTCTCATATCTC
LOC_Os01g45880
Os.33218.1.S1_at--974--4951Chr01:26393375..26393399 (25 bp)
GCATACTAACTTCTCATATCTCATT
LOC_Os01g45880
Os.33218.1.S1_at--378--331Chr01:26393373..26393397 (25 bp)
ATACTAACTTCTCATATCTCATTGT
LOC_Os01g45880
Os.33218.1.S1_at--735--2011Chr01:26393371..26393395 (25 bp)
ACTAACTTCTCATATCTCATTGTAC
LOC_Os01g45880
Os.33218.1.S1_at--574--9811Chr01:26393369..26393393 (25 bp)
TAACTTCTCATATCTCATTGTACTA
LOC_Os01g45880
Os.33218.1.S1_at--656--2051Chr01:26393367..26393391 (25 bp)
ACTTCTCATATCTCATTGTACTAAA
LOC_Os01g45880
Target Sequence 
TAACAAGGGAATTTGGATAACTGCCAAACCTAAAAGTGGCAATTAGTTAAATTCCCCTATAATTTGTACCCTTCCGCATA
CTAACTTCTCATATCTCATTGTACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis