Browse Element(s) Details


Os.33218.2.A1_x_at

Description gb:NM_192328.1
DB_XREF= gi:34911739
GEN=P0707D10.34
TID=Os.33218.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.34 (P0707D10.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0707D10.34 (P0707D10.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g458903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33218.2.A1_x_at--430--5791Chr01:26398414..26398438 (25 bp)
GACGACTCAGGCGACTCCGGATCGG
LOC_Os01g45890
Os.33218.2.A1_x_at--146--5631NONE
GACACCGGCGAGTGTAAATGTTTCT
NONE
Os.33218.2.A1_x_at--976--6831Chr01:26399428..26399452 (25 bp)
GTTTCTCATCTGAAAATCGGGTGAT
LOC_Os01g45890
Os.33218.2.A1_x_at--455--6591Chr01:26399450..26399474 (25 bp)
GATTGTTTACAACAACCGTGATGGT
LOC_Os01g45890
Os.33218.2.A1_x_at--476--6251Chr01:26401637..26401658 (22 bp)
GATGGTAGATATGCATATTCGGAAT
NONE
Os.33218.2.A1_x_at--525--10211Chr01:26401649..26401673 (25 bp)
TATTCGGAATTGATCATCCACCGCC
NONE
Os.33218.2.A1_x_at--181--3171Chr01:26401656..26401680 (25 bp)
AATTGATCATCCACCGCCCACTAAA
NONE
Os.33218.2.A1_x_at--1091--4511Chr01:26401671..26401695 (25 bp)
GCCCACTAAACAGAAAACACAAACT
NONE
Os.33218.2.A1_x_at--196--3291Chr01:26401690..26401714 (25 bp)
CAAACTATATGAAAGCAGGCCCTAC
NONE
Os.33218.2.A1_x_at--290--2351Chr01:26401701..26401725 (25 bp)
AAAGCAGGCCCTACGAACACATTCT
NONE
Os.33218.2.A1_x_at--721--8391Chr01:26401707..26401731 (25 bp)
GGCCCTACGAACACATTCTTTTCAT
NONE
Target Sequence 
GACGACTCAGGCGACTCCGGATCGGTGGCGGCGAAGCCGTCGGCACACGCGGAGGCGGTCGACAAGTCGGAGATTGGGGG
CGGCGCGGAGGACACCGGCGAGTGTAAATGTTTCTCATCTGAAAATCGGGTGATTGTTTACAACAACCGTGATGGTAGAT
ATGCATATTCGGAATTGATCATCCACCGCCCACTAAACAGAAAACACAAACTATATGAAAGCAGGCCCTACGAACACATT
CTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33218.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis