Browse Element(s) Details


OsAffx.11482.1.S1_at

Description tigr:9629.m04390
TID=OsAffx.11482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11482.1.S1_at--42--2171Chr01:26398505..26398892 (25 bp)
ACACCGGCGAGGCAGTTCTTAGATC
LOC_Os01g45890
OsAffx.11482.1.S1_at--607--1771Chr01:26398507..26398894 (25 bp)
ACCGGCGAGGCAGTTCTTAGATCAG
LOC_Os01g45890
OsAffx.11482.1.S1_at--173--4631Chr01:26398877..26398898 (22 bp)
GCGAGGCAGTTCTTAGATCAGCTTT
LOC_Os01g45890
OsAffx.11482.1.S1_at--235--3451Chr01:26398880..26398904 (25 bp)
CAGTTCTTAGATCAGCTTTGCATTC
LOC_Os01g45890
OsAffx.11482.1.S1_at--1039--10031Chr01:26398887..26398911 (25 bp)
TAGATCAGCTTTGCATTCCACTTGG
LOC_Os01g45890
OsAffx.11482.1.S1_at--1090--391Chr01:26398890..26398914 (25 bp)
ATCAGCTTTGCATTCCACTTGGTTA
LOC_Os01g45890
OsAffx.11482.1.S1_at--711--1551Chr01:26398893..26398917 (25 bp)
AGCTTTGCATTCCACTTGGTTAATC
LOC_Os01g45890
OsAffx.11482.1.S1_at--887--4931Chr01:26398899..26398923 (25 bp)
GCATTCCACTTGGTTAATCTGCAAG
LOC_Os01g45890
OsAffx.11482.1.S1_at--728--9011Chr01:26398918..26398942 (25 bp)
TGCAAGACTACAAGAGGGTTTAATC
LOC_Os01g45890
OsAffx.11482.1.S1_at--234--3231Chr01:26398928..26399425 (25 bp)
CAAGAGGGTTTAATCTGCAGTGTAA
LOC_Os01g45890
OsAffx.11482.1.S1_at--535--10331Chr01:26398936..26399433 (25 bp)
TTTAATCTGCAGTGTAAATGTTTCT
LOC_Os01g45890
Target Sequence 
ACACCGGCGAGGCAGTTCTTAGATCAGCTTTGCATTCCACTTGGTTAATCTGCAAGACTACAAGAGGGTTTAATCTGCAG
TGTAAATGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis