Browse Element(s) Details


OsAffx.2245.1.S1_at

Description tigr:9629.m04395
TID=OsAffx.2245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4594010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein
LOC_Os01g45990Os.50245.1.S1_x_at11/111+26446568..26453013Potassium channel AKT6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2245.1.S1_at--696--4511NONE
GCCGAGCGGAGTACACAAACACACG
NONE
OsAffx.2245.1.S1_at--1056--4671Chr01:26422251..26422275 (25 bp)
GCGGAGTACACAAACACACGAAGAG
LOC_Os01g45940
OsAffx.2245.1.S1_at--1008--771Chr01:26422228..26422252 (25 bp)
AGAAAACTGAAAACACCGTGGGCAT
LOC_Os01g45940
OsAffx.2245.1.S1_at--603--8971Chr01:26422221..26422245 (25 bp)
TGAAAACACCGTGGGCATGCGTTCC
LOC_Os01g45940
OsAffx.2245.1.S1_at--622--2471Chr01:26422217..26422241 (25 bp)
AACACCGTGGGCATGCGTTCCCATG
LOC_Os01g45940
OsAffx.2245.1.S1_at--315--8271Chr01:26422208..26422232 (25 bp)
GGCATGCGTTCCCATGCACTGCATG
LOC_Os01g45940
OsAffx.2245.1.S1_at--722--5091Chr01:26422174..26422198 (25 bp)
GCACCCGATGCCATCAGTTGTTGGA
LOC_Os01g45940
OsAffx.2245.1.S1_at--997--4191Chr01:26422171..26422195 (25 bp)
CCCGATGCCATCAGTTGTTGGAAGA
LOC_Os01g45940
OsAffx.2245.1.S1_at--675--6631Chr01:26422158..26422182 (25 bp)
GTTGTTGGAAGAAAACTGCGAGCAT
LOC_Os01g45940
OsAffx.2245.1.S1_at--1130--2531Chr01:26422145..26422169 (25 bp)
AACTGCGAGCATATGGTGGGACCGT
LOC_Os01g45940
OsAffx.2245.1.S1_at--541--911Chr01:26422117..26422141 (25 bp)
AGGCTGGGAGCATAGCACTACACAC
LOC_Os01g45940
Target Sequence 
GCCGAGCGGAGTACACAAACACACGAAGAGAAAACTGAAAACACCGTGGGCATGCGTTCCCATGCACTGCATGCCACCCG
CCGCACCCGATGCCATCAGTTGTTGGAAGAAAACTGCGAGCATATGGTGGGACCGTGGGAGGCTGGGAGCATAGCACTAC
ACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis