Browse Element(s) Details


OsAffx.26507.1.S1_x_at

Description tigr:9632.m04603
TID=OsAffx.26507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4765011/11expressed protein
LOC_Os01g193407/11hypothetical protein
LOC_Os08g038602/11expressed protein
LOC_Os01g458901/11expressed protein
LOC_Os11g435401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26507.1.S1_x_at--184--8394Chr12:19038247..19038686 (25 bp)
GGCGACGGCGGTGGATGCGATGGAT
NONE
OsAffx.26507.1.S1_x_at--449--6353Chr08:1834723..1834742 (20 bp)
GATGCGATGGATGCGGCCGCTATCC
LOC_Os08g03860
OsAffx.26507.1.S1_x_at--994--3691Chr04:28059490..28059514 (25 bp)
CTATCCCCCGATGCGTGAGGATGAG
LOC_Os04g47650
OsAffx.26507.1.S1_x_at--469--6052Chr01:10942391..10942414 (24 bp)
GAGTTGGGTGCGGATCGTTGCGCCG
LOC_Os01g19340
OsAffx.26507.1.S1_x_at--336--4515Chr11:25772901..25772935 (24 bp)
GCCGTTGGATTTAGCTCATACTCCA
LOC_Os11g43540
OsAffx.26507.1.S1_x_at--816--4231Chr04:28059438..28059462 (25 bp)
CCGTTGGATTTAGCTCATACTCCAC
LOC_Os04g47650
OsAffx.26507.1.S1_x_at--451--4031Chr04:28059437..28059461 (25 bp)
CGTTGGATTTAGCTCATACTCCACG
LOC_Os04g47650
OsAffx.26507.1.S1_x_at--566--6612Chr01:10942414..10942446 (25 bp)
GTTGGATTTAGCTCATACTCCACGT
LOC_Os01g19340
OsAffx.26507.1.S1_x_at--604--10852Chr01:10942415..10942447 (25 bp)
TTGGATTTAGCTCATACTCCACGTG
LOC_Os01g19340
OsAffx.26507.1.S1_x_at--423--8572Chr01:10942416..10942448 (25 bp)
TGGATTTAGCTCATACTCCACGTGT
LOC_Os01g19340
OsAffx.26507.1.S1_x_at--780--7932Chr01:10942417..10942449 (25 bp)
GGATTTAGCTCATACTCCACGTGTC
LOC_Os01g19340
Target Sequence 
GGCGACGGCGGTGGATGCGATGGATGCGGCCGCGGCGGTGGATGCGATGGATGCGGCCGCTATCCCCCGATGCGTGAGGA
TGAGCCGAGGAGTTGGGTGCGGATCGTTGCGCCGTTGGATTTAGCTCATACTCCACGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26507.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis