Browse Element(s) Details


Os.12612.1.S1_at

Description gb:AK120614.1
DB_XREF= gi:37990237
TID=Os.12612.1
CNT=49
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151P06, full insert sequence.
FL= gb:AK120614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4769011/11HMG box family protein, expressed
LOC_Os06g125901/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47730NANA4+28100135..28102625retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006333biological_processchromatin assembly or disassembly
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000785cellular_componentchromatin
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12612.1.S1_at--359--3051Chr04:28076707..28076731 (25 bp)
AATCGGTGTTCACTGCTTAGGGCTT
LOC_Os04g47690
Os.12612.1.S1_at--392--6791Chr04:28076750..28076774 (25 bp)
GTTATCCTTGTTATGTCCTGTTGTA
LOC_Os04g47690
Os.12612.1.S1_at--361--4591Chr04:28076785..28076809 (25 bp)
GCGAATGAAGGTACTCCTGGGCCGT
LOC_Os04g47690
Os.12612.1.S1_at--373--4991Chr04:28076811..28076835 (25 bp)
GCATGCTGGAGGTGTCTCTGTTTAA
LOC_Os04g47690
Os.12612.1.S1_at--570--8951Chr04:28076865..28076889 (25 bp)
TGACTGCTTTTCTTTTGCGAACCTC
LOC_Os04g47690
Os.12612.1.S1_at--1064--2611Chr04:28076884..28076908 (25 bp)
AACCTCCGCAGCATGTGTAAACTAT
LOC_Os04g47690
Os.12612.1.S1_at--813--9471Chr04:28076925..28076949 (25 bp)
TCTGATGACTAGTCCGCGATTGGCT
LOC_Os04g47690
Os.12612.1.S1_at--222--31Chr04:28076943..28076967 (25 bp)
ATTGGCTTTCTGTTAATCGCGTCTG
LOC_Os04g47690
Os.12612.1.S1_at--914--531Chr04:28076958..28076982 (25 bp)
ATCGCGTCTGCTGTATTCATATTCT
LOC_Os04g47690
Os.12612.1.S1_at--775--9871Chr04:28076989..28077013 (25 bp)
TACTCAGTTCGTGCCGTTATTGGTG
LOC_Os04g47690
Os.12612.1.S1_at--261--10852Chr04:28077008..28077032 (25 bp)
TTGGTGCATCTTTGGTTTATCTTTT
LOC_Os04g47690
Target Sequence 
AATCGGTGTTCACTGCTTAGGGCTTTAGCTTTGCTATGTTACTGTTATCCTTGTTATGTCCTGTTGTAAGGAAAACGTGC
GAATGAAGGTACTCCTGGGCCGTGGCATGCTGGAGGTGTCTCTGTTTAACTAGTAGCGAAGAAAATGNCTGAATACTGTT
GACTGCTTTTCTTTTGCGAACCTCCGCAGCATGTGTAAACTATTTTGCTTATTCACTGATCTGATGACTAGTCCGCGATT
GGCTTTCTGTTAATCGCGTCTGCTGTATTCATATTCTGNTNGTNTACTCAGTTCGTGCCGTTATTGGTGCATCTTTGGTT
TATCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis