Browse Element(s) Details


OsAffx.14317.1.S1_at

Description tigr:9632.m04607
TID=OsAffx.14317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY081451 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4768011/11Ser/Thr-rich protein T10 in DGCR region, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14317.1.S1_at--648--2951Chr04:28071948..28071972 (25 bp)
AATGGCTTTAACCTTGTATTGGCTG
LOC_Os04g47680
OsAffx.14317.1.S1_at--816--7331Chr04:28071975..28071999 (25 bp)
GTGCAGTCGGGAAATATGGCTTACA
LOC_Os04g47680
OsAffx.14317.1.S1_at--135--2331Chr04:28072035..28072059 (25 bp)
AAAGTTCTCCCTGGGTTCCATGTGC
LOC_Os04g47680
OsAffx.14317.1.S1_at--1008--10671Chr04:28072050..28072074 (25 bp)
TTCCATGTGCTTTCCAATGCTGCAA
LOC_Os04g47680
OsAffx.14317.1.S1_at--322--3171Chr04:28072073..28072094 (22 bp)
AATTGACTGCCCTTGGCCTAAGATG
LOC_Os04g47680
OsAffx.14317.1.S1_at--228--6251Chr04:28072420..28072444 (25 bp)
GATGGTGCGGAAGTCTCTTTACAAC
LOC_Os04g47680
OsAffx.14317.1.S1_at--991--6291Chr04:28072461..28072485 (25 bp)
GATGATGGATCCTGTCAAGGCTGAT
LOC_Os04g47680
OsAffx.14317.1.S1_at--1116--1131Chr04:28072494..28072518 (25 bp)
AGTGCCAGATACTGGTGTCGACCCT
LOC_Os04g47680
OsAffx.14317.1.S1_at--78--7451Chr04:28072508..28072532 (25 bp)
GTGTCGACCCTGACTGGGAATACCA
LOC_Os04g47680
OsAffx.14317.1.S1_at--988--1711Chr04:28072529..28072553 (25 bp)
ACCAGCTAAGCTCTATATTCATTGA
LOC_Os04g47680
OsAffx.14317.1.S1_at--592--1851Chr04:28072677..28072701 (25 bp)
ACGAAGCATGACTGCTCTTGCTGTG
LOC_Os04g47680
Target Sequence 
AATGGCTTTAACCTTGTATTGGCTGATGTGCAGTCGGGAAATATGGCTTACATATCTAATAGACCTGAGGGTGATCCAGT
GGTTCAGAAAGTTCTCCCTGGGTTCCATGTGCTTTCCAATGCTGCAATTGACTGCCCTTGGCCTAAGATGTTGCGCTTAG
GACAAAGTTTCAACAGATTTCTTGCAACACAGGATGGTGCGGAAGTCTCTTTACAACAGATGGTTGAAGAGTTGATGATG
GATCCTGTCAAGGCTGATAAATCTGCAGTGCCAGATACTGGTGTCGACCCTGACTGGGAATACCAGCTAAGCTCTATATT
CATTGACACTGAGAAAGGACAGGCACGATATGGAACACGAAGCATGACTGCTCTTGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis