Browse Element(s) Details


Os.49838.1.S1_at

Description gb:AK111866.1
DB_XREF= gi:37988529
TID=Os.49838.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040N14, full insert sequence.
FL= gb:AK111866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4772011/11Cis-zeatin O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47690Os.46886.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47690Os.12612.1.S1_at11/114+28074086..28077034HMG box family protein, expressed
LOC_Os04g47700Os.16987.1.S1_at6/114+28077546..28085930expressed protein
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47730NANA4+28100135..28102625retrotransposon protein, putative, unclassified
LOC_Os04g47740NANA4+28104147..28110070retrotransposon protein, putative, unclassified
LOC_Os04g47750OsAffx.7232.1.S1_at4/114+28111406..28111864transposon protein, putative, Pong sub-class, expressed
LOC_Os04g47760NANA4+28112225..28114207transposon protein, putative, Pong sub-class
LOC_Os04g47770OsAffx.26509.1.S1_s_at11/114+28117492..28119587Cis-zeatin O-glucosyltransferase, putative, expressed
LOC_Os04g47780Os.20175.1.A1_x_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47780Os.53162.1.S1_s_at11/114+28122611..28124173Amino acid transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49838.1.S1_at--882--1731Chr04:28097230..28097254 (25 bp)
ACCTCAAGGCCGGATTCTTGGTAAG
LOC_Os04g47720
Os.49838.1.S1_at--448--7731Chr04:28097276..28097300 (25 bp)
GGTGGTGCCGGCGACAACCATACAA
LOC_Os04g47720
Os.49838.1.S1_at--975--5611Chr04:28097288..28097312 (25 bp)
GACAACCATACAAGCGGTGATCGAA
LOC_Os04g47720
Os.49838.1.S1_at--313--6191Chr04:28097400..28097424 (25 bp)
GAGGACTTCGTTGATCATATCACAA
LOC_Os04g47720
Os.49838.1.S1_at--25--5351Chr04:28097432..28097456 (25 bp)
GAAGAACGCCATGTTCCGAAAGGTA
LOC_Os04g47720
Os.49838.1.S1_at--896--411Chr04:28097464..28097488 (25 bp)
ATCATATACCCTCATTTTTCAATCT
LOC_Os04g47720
Os.49838.1.S1_at--1059--6131Chr04:28097496..28097520 (25 bp)
GAGGGTATATGATTCAATCTCCTGT
LOC_Os04g47720
Os.49838.1.S1_at--332--431Chr04:28097512..28097536 (25 bp)
ATCTCCTGTTAAACTTTCTTTGGCT
LOC_Os04g47720
Os.49838.1.S1_at--1015--10471Chr04:28097536..28097560 (25 bp)
TTAATAAAATTCGACCGCACCGCTC
LOC_Os04g47720
Os.49838.1.S1_at--358--4831Chr04:28097557..28097581 (25 bp)
GCTCACGCCGGACCTTAAATAAAAG
LOC_Os04g47720
Os.49838.1.S1_at--403--3631Chr04:28097584..28097608 (25 bp)
CTTCAAACTTTGTGTGTGAGGCTTT
LOC_Os04g47720
Target Sequence 
ACCTCAAGGCCGGATTCTTGGTAAGGCCATGGGAGAAGCACGGTGAGGTGGTGCCGGCGACAACCATACAAGCGGTGATC
GAAAAGATGATGGCATCTGAAGAAGGGTTGGCGGTGCGGCAGCGCGCGAAGGCCCTCGGCCATGCCGTCCGTTCATCGCG
CAATGATCTTGAGGACTTCGTTGATCATATCACAAGATGATCGAAGAACGCCATGTTCCGAAAGGTAAAAATTAATCATA
TACCCTCATTTTTCAATCTAAATGTGGAGGGTATATGATTCAATCTCCTGTTAAACTTTCTTTGGCTTAATAAAATTCGA
CCGCACCGCTCACGCCGGACCTTAAATAAAAGGGCTTCAAACTTTGTGTGTGAGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis