Browse Element(s) Details


OsAffx.7232.1.S1_at

Description tigr:9639.m02549
TID=OsAffx.7232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2828010/11hypothetical protein
LOC_Os04g477504/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28260OsAffx.19049.1.S1_at11/1111+15746956..15747195hypothetical protein
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7232.1.S1_at--242--1751Chr11:15767444..15767468 (25 bp)
ACCTCATTACTAGAAGCAAGTCGCA
LOC_Os11g28280
OsAffx.7232.1.S1_at--837--5232Chr11:15767472..15767496 (25 bp)
GAATACAACACATATGCCCCTAAAG
LOC_Os11g28280
OsAffx.7232.1.S1_at--866--2432Chr11:15767502..15767526 (25 bp)
AAAAGAACAGCTATGCAGTGCAAGA
LOC_Os11g28280
OsAffx.7232.1.S1_at--282--10872Chr11:15767531..15767555 (25 bp)
TTGGAATTCAATCAGCACACTTGTT
LOC_Os11g28280
OsAffx.7232.1.S1_at--512--5092Chr11:15767545..15767569 (25 bp)
GCACACTTGTTGCAAAGTTTCATGG
LOC_Os11g28280
OsAffx.7232.1.S1_at--627--7992Chr11:15767568..15767797 (25 bp)
GGATGTTGGAGCTTACACTTCTTCT
LOC_Os11g28280
OsAffx.7232.1.S1_at--1126--8511NONE
TGGAGCTTACACTTCTTCTTCAAAC
NONE
OsAffx.7232.1.S1_at--872--5051Chr11:15767819..15767843 (25 bp)
GCAGCTGATGCTGAACACCGTCGAC
LOC_Os11g28280
OsAffx.7232.1.S1_at--345--1791Chr11:15767835..15767859 (25 bp)
ACCGTCGACCACAAGGACAGAAGGC
LOC_Os11g28280
OsAffx.7232.1.S1_at--698--4192Chr12:2859806..2859830 (25 bp)
CCCGTGCGATGGAGACCGAGACCAA
NONE
OsAffx.7232.1.S1_at--1060--5851Chr11:15769022..15769046 (25 bp)
GACCAAGCCGGTACAGCAGATGCGT
LOC_Os11g28280
Target Sequence 
ACCTCATTACTAGAAGCAAGTCGCAGAAGAATACAACACATATGCCCCTAAAGGAAAGAAAAGAACAGCTATGCAGTGCA
AGAATCATTGGAATTCAATCAGCACACTTGTTGCAAAGTTTCATGGATGTTGGAGCTTACACTTCTTCTTCAAACAGAAA
CACTGATGAAGCAGCTGATGCTGAACACCGTCGACCACAAGGACAGAAGGCAGCAAAAGAGCAGCGGAAGGGGAAGGGGA
AAGGGAAGTTGGGGAAGGGTAGCAATGCAGCGGCTCGGTTGGATACAGACCGTGTCGGCCTGGAGGGCAAGGCAGAGAGG
CCGAGTGGTGTCGGCCCGTGCGATGGAGACCGAGACCAAGCCGGTACAGCAGATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis