Browse Element(s) Details


Os.12914.1.S2_at

Description gb:AK110345.1
DB_XREF= gi:32995554
TID=Os.12914.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-G05, full insert sequence.
FL= gb:AK112047.1 gb:AK110345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2827011/11Zinc finger CCCH type domain containing protein ZFN, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28220OsAffx.5018.1.S1_at1/1111+15725381..15726101hypothetical protein
LOC_Os11g28230OsAffx.26069.1.S1_x_at2/1111+15729120..15732712Transposable element protein, putative, Transposase_28
LOC_Os11g28240Os.1709.1.S1_x_at5/1111+15733989..15737594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28250NANA11+15738084..15739904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28260OsAffx.19049.1.S1_at11/1111+15746956..15747195hypothetical protein
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12914.1.S2_at--498--211Chr11:15748319..15748343 (25 bp)
ATTTGCACAGCTATCAAGGTTGCCA
LOC_Os11g28270
Os.12914.1.S2_at--25--2911Chr11:15748304..15748328 (25 bp)
AAGGTTGCCAAACACCTCTATCCGG
LOC_Os11g28270
Os.12914.1.S2_at--1022--6771Chr11:15748278..15748302 (25 bp)
GTTACGCCTCCTAAATCCTGATGAA
LOC_Os11g28270
Os.12914.1.S2_at--620--8071Chr11:15748252..15748276 (25 bp)
GGAGCAGCTGCGTCAACACCTATGT
LOC_Os11g28270
Os.12914.1.S2_at--1009--1591Chr11:15748212..15748236 (25 bp)
AGCTGCATCAGGATTCTGGAGTGTC
LOC_Os11g28270
Os.12914.1.S2_at--227--1231Chr11:15748155..15748179 (25 bp)
AGTTCCAGATGACTCCTAATCCTAT
LOC_Os11g28270
Os.12914.1.S2_at--574--551Chr11:15748126..15748150 (25 bp)
ATCCGATACGAGTAGGTTCGCCACA
LOC_Os11g28270
Os.12914.1.S2_at--231--7911Chr11:15748112..15748136 (25 bp)
GGTTCGCCACATGCGGATGAAATGT
LOC_Os11g28270
Os.12914.1.S2_at--1006--7931Chr11:15748038..15748062 (25 bp)
GGATTATCAGATCATCAGCCCTTCA
LOC_Os11g28270
Os.12914.1.S2_at--531--2531Chr11:15748012..15748036 (25 bp)
AACTATGGGCCTGGTTGGCACAGCT
LOC_Os11g28270
Os.12914.1.S2_at--1036--8691Chr11:15747765..15747789 (25 bp)
TGTCCACATTATAAGTTTGCCTAAG
LOC_Os11g28270
Target Sequence 
ATTTGCACAGCTATCAAGGTTGCCAAACACCTCTATCCGGTGTTACGCCTCCTAAATCCTGATGAACGGAGCAGCTGCGT
CAACACCTATGTCCTGATAAACGGAGCAGCTGCATCAGGATTCTGGAGTGTCAGGTAGGTGAAGGTATAATGTGGAGCAA
AAGGAGTTCCAGATGACTCCTAATCCTATAATCATCCGATACGAGTAGGTTCGCCACATGCGGATGAAATGTAGTGGATG
GTTTCTAAACTACAAATGTAGTGGATGGTTTCTTATAAATAGGATTATCAGATCATCAGCCCTTCAAAACTATGGGCCTG
GTTGGCACAGCTCTAGCTCCCGCTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTTAGCTCCACCAAAAATGGG
AGTGGAGTTGGGTAGAGCTCTCTCACAGAATGTACTGGAGTTGTAGAGCTGGGTTTAGGCAGCTCCACAACTCCACTTCA
GACTCAACTCCTAAAGTTATATTTAGGAGTTAGAGTTGTACTAAACAGGCCTTACAAATAGAACACTACTTATATGTCCA
CATTATAAGTTTGCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12914.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis