Browse Element(s) Details


OsAffx.19049.1.S1_at

Description tigr:9639.m02547
TID=OsAffx.19049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28220OsAffx.5018.1.S1_at1/1111+15725381..15726101hypothetical protein
LOC_Os11g28230OsAffx.26069.1.S1_x_at2/1111+15729120..15732712Transposable element protein, putative, Transposase_28
LOC_Os11g28240Os.1709.1.S1_x_at5/1111+15733989..15737594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28250NANA11+15738084..15739904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28260OsAffx.19049.1.S1_at11/1111+15746956..15747195hypothetical protein
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19049.1.S1_at--914--5231Chr11:15746994..15747018 (25 bp)
GAATACGTTGGTTGAGGCGGGCGTT
LOC_Os11g28260
OsAffx.19049.1.S1_at--701--7551Chr11:15747012..15747036 (25 bp)
GGGCGTTGGCCGCACGGACGTCAAG
LOC_Os11g28260
OsAffx.19049.1.S1_at--1080--7071Chr11:15747031..15747055 (25 bp)
GTCAAGCGGCCAATCGAGGAGGCAC
LOC_Os11g28260
OsAffx.19049.1.S1_at--487--991Chr11:15747047..15747071 (25 bp)
AGGAGGCACGATGGAGCGGGCCAGC
LOC_Os11g28260
OsAffx.19049.1.S1_at--46--531Chr11:15747085..15747109 (25 bp)
ATCGAGGTGGGCGTCAAGGCAGACG
LOC_Os11g28260
OsAffx.19049.1.S1_at--250--5051Chr11:15747103..15747127 (25 bp)
GCAGACGAGGAGACTCAATCGGACT
LOC_Os11g28260
OsAffx.19049.1.S1_at--950--6171Chr11:15747109..15747133 (25 bp)
GAGGAGACTCAATCGGACTCGCGCC
LOC_Os11g28260
OsAffx.19049.1.S1_at--209--5991Chr11:15747112..15747136 (25 bp)
GAGACTCAATCGGACTCGCGCCAAG
LOC_Os11g28260
OsAffx.19049.1.S1_at--330--8111Chr11:15747123..15747147 (25 bp)
GGACTCGCGCCAAGCTACTAATGTT
LOC_Os11g28260
OsAffx.19049.1.S1_at--1059--9331Chr11:15747127..15747151 (25 bp)
TCGCGCCAAGCTACTAATGTTGTTG
LOC_Os11g28260
OsAffx.19049.1.S1_at--496--4391Chr11:15747131..15747155 (25 bp)
GCCAAGCTACTAATGTTGTTGGCCA
LOC_Os11g28260
Target Sequence 
GAATACGTTGGTTGAGGCGGGCGTTGGCCGCACGGACGTCAAGCGGCCAATCGAGGAGGCACGATGGAGCGGGCCAGCGG
GGATGGCATCCATCGAGGTGGGCGTCAAGGCAGACGAGGAGACTCAATCGGACTCGCGCCAAGCTACTAATGTTGTTGGC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis