Browse Element(s) Details


Os.12914.1.S1_at

Description gb:AK112047.1
DB_XREF= gi:37988710
TID=Os.12914.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F12, full insert sequence.
FL= gb:AK112047.1 gb:AK110345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2827011/11Zinc finger CCCH type domain containing protein ZFN, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28220OsAffx.5018.1.S1_at1/1111+15725381..15726101hypothetical protein
LOC_Os11g28230OsAffx.26069.1.S1_x_at2/1111+15729120..15732712Transposable element protein, putative, Transposase_28
LOC_Os11g28240Os.1709.1.S1_x_at5/1111+15733989..15737594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28250NANA11+15738084..15739904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28260OsAffx.19049.1.S1_at11/1111+15746956..15747195hypothetical protein
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12914.1.S1_at--282--1351Chr11:15749082..15749106 (25 bp)
AGAGAGAGGCGTCCTAAGCCATCCT
LOC_Os11g28270
Os.12914.1.S1_at--792--2291Chr11:15749051..15749075 (25 bp)
AAATGTTTCATGCTGCTTCCTGTTC
LOC_Os11g28270
Os.12914.1.S1_at--1041--8011Chr11:15748989..15749013 (25 bp)
GGAGCCGAAGCTGTACAGGTCTCGC
LOC_Os11g28270
Os.12914.1.S1_at--949--4911Chr11:15748930..15748954 (25 bp)
GCTTGCTTCAAGACTTCCAACATGT
LOC_Os11g28270
Os.12914.1.S1_at--1003--9051Chr11:15748879..15748903 (25 bp)
TGCTTGTTAGGGATGCTCTTTTGCC
LOC_Os11g28270
Os.12914.1.S1_at--665--2391Chr11:15748806..15748830 (25 bp)
AAACTCACCTCTGGACATTCGATTT
LOC_Os11g28270
Os.12914.1.S1_at--912--91Chr11:15748790..15748814 (25 bp)
ATTCGATTTCGAGTGATGTGCCTTG
LOC_Os11g28270
Os.12914.1.S1_at--1027--7651Chr11:15748708..15748732 (25 bp)
GGGATATGTGCAAATCGCTCTCCTC
LOC_Os11g28270
Os.12914.1.S1_at--484--10691Chr11:15748665..15748689 (25 bp)
TTGCCTTCCCTCTAATTTAGCAGTT
LOC_Os11g28270
Os.12914.1.S1_at--173--4211Chr11:15748626..15748650 (25 bp)
CCCCGCTTCTGGAATTGTGCATGTT
LOC_Os11g28270
Os.12914.1.S1_at--774--211Chr11:15748562..15748586 (25 bp)
ATATTTATACCCTGTCACTTGTTCC
LOC_Os11g28270
Target Sequence 
AGAGAGAGGCGTCCTAAGCCATCCTCGGTGCAAATGTTTCATGCTGCTTCCTGTTCTTGACTCTCTGAGTAAATTACCCG
CAACAAAACTTGAGGAGCCGAAGCTGTACAGGTCTCGCCCTTTTGCCTCACATTTGAGCTTTACATACCGGAGCTTGCTT
CAAGACTTCCAACATGTATCGCATTCAGGCAGGAAAAAGTTCTTGCTTGTTAGGGATGCTCTTTTGCCCCGTGTAAACGG
GACAACCGACCTTATTTAAACATCTATATATGGAACAAACTCACCTCTGGACATTCGATTTCGAGTGATGTGCCTTGATC
CCTTTGTTGTAGTTATACAGGTGCCTTGCAATGGACAAAGCTTTTGCCAAACGGGGGATATGTGCAAATCGCTCTCCTCT
CTGTTTCTTTCTTTTTTTTGCCTTCCCTCTAATTTAGCAGTTTCATAAGGGGCAACCCCCGCTTCTGGAATTGTGCATGT
TGAGGATGCGGAAATAATAGGCAATTGTATAATCATCTACATATTTATACCCTGTCACTTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis