Browse Element(s) Details


OsAffx.31179.1.S1_at

Description tigr:9639.m02552
TID=OsAffx.31179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P21-Rho-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2831011/11P21-Rho-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein
LOC_Os11g28340Os.16375.1.S1_at11/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28340Os.22994.1.S1_at1/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31179.1.S1_at--556--1211Chr11:15780150..15780174 (25 bp)
AGTTATTTCAGATCAGCTCCAGTTC
LOC_Os11g28310
OsAffx.31179.1.S1_at--272--1231Chr11:15780170..15780449 (25 bp)
AGTTCTTCCTGCAGGCGCGATGCAG
LOC_Os11g28310
OsAffx.31179.1.S1_at--479--6331Chr11:15780443..15780467 (25 bp)
GATGCAGGACGAGGAATCGACATTC
LOC_Os11g28310
OsAffx.31179.1.S1_at--1034--4471Chr11:15780562..15780586 (25 bp)
GCCTGTCCCACATCTTCGAGGTGTA
LOC_Os11g28310
OsAffx.31179.1.S1_at--198--3471Chr11:15780626..15780650 (25 bp)
CATAGAGATCGGGTTCCCCACGGAC
LOC_Os11g28310
OsAffx.31179.1.S1_at--491--1931Chr11:15780645..15780669 (25 bp)
ACGGACGTGCAGCATGTGGCACACA
LOC_Os11g28310
OsAffx.31179.1.S1_at--503--3491Chr11:15780657..15780681 (25 bp)
CATGTGGCACACATCGGCCTGGACG
LOC_Os11g28310
OsAffx.31179.1.S1_at--384--7711Chr11:15780681..15780705 (25 bp)
GGGTCCAGCAGCATGTCGAGCCTGA
LOC_Os11g28310
OsAffx.31179.1.S1_at--754--771Chr11:15780741..15780765 (25 bp)
ATGTCCAGCCTCACCATGGAGCAGT
LOC_Os11g28310
OsAffx.31179.1.S1_at--645--8531Chr11:15780757..15780781 (25 bp)
TGGAGCAGTTCGAGTTCGCCATGGC
LOC_Os11g28310
OsAffx.31179.1.S1_at--1090--8451Chr11:15780778..15780802 (25 bp)
TGGCCTCACTGGCTGCTCACAAGGA
LOC_Os11g28310
Target Sequence 
AGTTATTTCAGATCAGCTCCAGTTCTTCCTGCAGGCGCGATGCAGGACGAGGAATCGACATTCGGGAAGGCGAAGAGCGC
GGACCAGGAGGAGAGGCAGCAGGCGGCGAGGCGCGACTTCCTCGCGGGGATCCGGAAGCTCATCAAGAGCTTCAAGAGCC
TGTCCCACATCTTCGAGGTGTACAAGGAGGACGACGAGGACGAGGACGAGGACAGCATGAACATAGAGATCGGGTTCCCC
ACGGACGTGCAGCATGTGGCACACATCGGCCTGGACGGGTCCAGCAGCATGTCGAGCCTGAGGGGCCTGCAGGAGGAGGC
CAGGGAGCTGCTCTCCATGTCCAGCCTCACCATGGAGCAGTTCGAGTTCGCCATGGCCTCACTGGCTGCTCACAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis