Browse Element(s) Details


Os.16375.1.S1_at

Description gb:AK065994.1
DB_XREF= gi:32976012
TID=Os.16375.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049N15, full insert sequence.
FL= gb:AK060156.1 gb:AK065994.1 gb:AK104759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2834011/11ER lumen protein retaining receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein
LOC_Os11g28340Os.16375.1.S1_at11/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28340Os.22994.1.S1_at1/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28350Os.47963.1.S1_at11/1111+15807906..15810405CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006621biological_processprotein retention in ER
GO:0015031biological_processprotein transport
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
GO:0004872molecular_functionreceptor activity
GO:0005046molecular_functionKDEL sequence binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16375.1.S1_at--346--5231Chr11:15806757..15806781 (25 bp)
GAATATTGACAACCTGACTGGCCAA
LOC_Os11g28340
Os.16375.1.S1_at--405--8431Chr11:15806776..15806798 (23 bp)
GGCCAATATGTCTTCTTTCTAGGTG
LOC_Os11g28340
Os.16375.1.S1_at--607--10311Chr11:15806791..15807101 (25 bp)
TTTCTAGGTGCATACCGTGTGCTGT
LOC_Os11g28340
Os.16375.1.S1_at--923--3991Chr11:15807092..15807116 (25 bp)
CGTGTGCTGTATATCCTTAACTGGA
LOC_Os11g28340
Os.16375.1.S1_at--1--8571Chr11:15807113..15807137 (25 bp)
TGGATCTACCGATACTTCACTGAGC
LOC_Os11g28340
Os.16375.1.S1_at--1119--7331Chr11:15807259..15807283 (25 bp)
GTGCAGACTCTCTTGTATGCTGACT
LOC_Os11g28340
Os.16375.1.S1_at--790--4751Chr11:15807277..15807301 (25 bp)
GCTGACTTCTTCTACTATTACATAA
LOC_Os11g28340
Os.16375.1.S1_at--642--4471Chr11:15807416..15807440 (25 bp)
GCCTGAGCTCATTTTTCATCCAAGA
LOC_Os11g28340
Os.16375.1.S1_at--325--2891Chr11:15807582..15807606 (25 bp)
AAGGGTCACCTTGTATCTTGTAAGA
LOC_Os11g28340
Os.16375.1.S1_at--151--2591Chr11:15807693..15807717 (25 bp)
AACGTGGTATGATCCTTCAGCTTGG
LOC_Os11g28340
Os.16375.1.S1_at--991--1191Chr11:15807726..15807750 (25 bp)
AGTATTCTGTGTTCTGTCTTCATTT
LOC_Os11g28340
Target Sequence 
GAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACC
GATACTTCACTGAGCCCCATTTCGTTCATTGGATAAGCTGGGTTGCGGGCATCGTGCAGACTCTCTTGTATGCTGACTTC
TTCTACTATTACATAATGAGCTGGAAGAACAATGTGAAGCTGGAGCTACCAGCCTGAGCTCATTTTTCATCCAAGATAGN
CTAGGTAAAACTTGTTAAATAGATAGAAAGGCATGATACACCAAGGCCACTGCTCCNGGTTATGATATATGCATCTTGGT
TTCCTGCTCTATCCTCTTGTTTATTTCTTTTCCTATTTGTCGGATGAGAGGAAATCCAAGGGTCACCTTGTATCTTGTAA
GACAATTAAGCACAGAGAGATGAGTACCAGGACGTTCTGAGTTATGATAGGTTTTGAGACACAATGGAAATGCTATCTTT
TAGTGTACAACGTGGTATGATCCTTCAGCTTGGAAGAATAAAGTATTCTGTGTTCTGTCTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis