Browse Element(s) Details


Os.54773.1.S1_at

Description gb:AK106730.1
DB_XREF= gi:32991939
TID=Os.54773.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H09, full insert sequence.
FL= gb:AK106730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2836011/11Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein
LOC_Os11g28340Os.16375.1.S1_at11/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28340Os.22994.1.S1_at1/1111+15804006..15807788ER lumen protein retaining receptor, putative, expressed
LOC_Os11g28350Os.47963.1.S1_at11/1111+15807906..15810405CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
LOC_Os11g28370OsAffx.19050.1.S1_at11/1111+15834004..15836835hypothetical protein
LOC_Os11g28380OsAffx.19051.1.S1_at11/1111+15838441..15838878hypothetical protein
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54773.1.S1_at--508--8371Chr11:15819003..15819027 (25 bp)
GGCGTTGAAGCCTTACGTTTGAACT
LOC_Os11g28360
Os.54773.1.S1_at--1020--6851Chr11:15819136..15819160 (25 bp)
GTTTGATGCCAGTCGAATTTGCTGA
LOC_Os11g28360
Os.54773.1.S1_at--625--1171Chr11:15819177..15819201 (25 bp)
AGTATGCAACAACCGAGAGATTTTT
LOC_Os11g28360
Os.54773.1.S1_at--786--9891Chr11:15819301..15819325 (25 bp)
TACTTTTTGTGGGTTGTGCATTCTG
LOC_Os11g28360
Os.54773.1.S1_at--352--7331Chr11:15819316..15819340 (25 bp)
GTGCATTCTGTTATGCTACCTGCGT
LOC_Os11g28360
Os.54773.1.S1_at--101--4831Chr11:15819330..15819354 (25 bp)
GCTACCTGCGTTCAAATTTCTACTT
LOC_Os11g28360
Os.54773.1.S1_at--558--6731Chr11:15819399..15819423 (25 bp)
GTTCTTTTTTATGTCAGCCTTTGTC
LOC_Os11g28360
Os.54773.1.S1_at--97--1691Chr11:15819414..15819437 (24 bp)
AGCCTTTGTCAGTTCATATGGTTGC
LOC_Os11g28360
Os.54773.1.S1_at--1142--3051Chr11:15819504..15819528 (25 bp)
AATCTCAGATGCGTGATTCCCTTGT
LOC_Os11g28360
Os.54773.1.S1_at--560--8171Chr11:15819580..15819604 (25 bp)
GGAACATTTTTTGTGCACTGATTTG
LOC_Os11g28360
Os.54773.1.S1_at--731--3331Chr11:15819595..15819619 (25 bp)
CACTGATTTGGTGCGTGTGTATCAT
LOC_Os11g28360
Target Sequence 
GGCGTTGAAGCCTTACGTTTGAACTTAAAGTGTTACAGAGATAGTGATATTATTTTGTTACATGCATTTGGTTTGATGCC
AGTCGAATTTGCTGATTTTAGATTTCTACATAGTATGCAACAACCGAGAGATTTTTGATACTTGGTGAAATTAGTGAAAT
TGACAATTTTGTTTGTTTTGATTCAGTAACAATTCCCTTTTTTTTTGACGGGAAAGTAACAATTCCCTTGGATATATACT
TTTTGTGGGTTGTGCATTCTGTTATGCTACCTGCGTTCAAATTTCTACTTTTTTTCGTTGTATAAGTGACTTATCAAGTT
TATTTGATGCTTCTGTTCTTTTTTATGTCAGCCTTTGTCAGTTCATATGGTTGCGCTTGAAATCAATTTTCTGATTTCTT
CTTTTGACCAAAAAATTTCTAATTTCTTACAGCAAAGAGAATCTCAGATGCGTGATTCCCTTGTCATATTAAGATAACGG
ATACAAGCTACAGTTATTAGAAATAATTATTTTTTGGAACATTTTTTGTGCACTGATTTGGTGCGTGTGTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis