Browse Element(s) Details


Os.22994.1.S1_at

Description gb:AK065472.1
DB_XREF= gi:32975490
TID=Os.22994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.24 (P0423B08.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020B04, full insert sequence.
FL= gb:AK065472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g089002/11expressed protein
LOC_Os11g283401/11ER lumen protein retaining receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006621biological_processprotein retention in ER
GO:0015031biological_processprotein transport
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
GO:0004872molecular_functionreceptor activity
GO:0005046molecular_functionKDEL sequence binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22994.1.S1_at--237--6412Chr05:4903803..4903827 (25 bp)
GTCAAGTTGTTACACTCGAACGTTC
LOC_Os05g08900
Os.22994.1.S1_at--283--28333Chr12:7151332..7151356 (25 bp)
AAGTTCTTGCACTATATCGCACCCA
NONE
Os.22994.1.S1_at--142--5094Chr11:15805835..15805858 (24 bp)
GCACCCATCTACCAAGTTGTTGTAC
LOC_Os11g28340
Os.22994.1.S1_at--275--6992Chr03:21653767..21653786 (20 bp)
GTACCGTTGGTGCAATTTACTCTAT
NONE
Os.22994.1.S1_at--501--232Chr04:24692775..24692799 (25 bp)
ATATTTCCTATGTTGCAGCAGACGA
NONE
Os.22994.1.S1_at--554--6652Chr04:24692747..24692771 (25 bp)
GTTGATATTGCCATCTCTGAATTCA
NONE
Os.22994.1.S1_at--558--112Chr04:24692727..24692751 (25 bp)
ATTCATTGTCGCCAGGAGATCAGTT
NONE
Os.22994.1.S1_at--696--6832Chr04:24692655..24692679 (25 bp)
GTTTCGAATTCGTTGCAGTTTCTGT
NONE
Os.22994.1.S1_at--43--4953Chr01:41859777..41859801 (25 bp)
GCATTGGTGGCTCATATTTTGTTCT
NONE
Os.22994.1.S1_at--96--1191Chr04:24692446..24692470 (25 bp)
AGTACTGGATATTGCACTGCTAGCT
NONE
Os.22994.1.S1_at--819--10672Chr04:24692397..24692421 (25 bp)
TTGCCCTGTATTTTCAAAACCCATG
NONE
Target Sequence 
GTCAAGTTGTTACACTCGAACGTTCAATTCTCAAGTTCTTGCACTATATCGCACCCATCTACCAAGTTGTTGTACCGTTG
GTGCAATTTACTCTATAATTAACATATGATGGATGTTAAATTCAATGTTTTCTGAAAATTATTACACAGTCTAACTGCAT
CATATATTTCCTATGTTGCAGCAGACGAACAGTTGATATTGCCATCTCTGAATTCATTGTCGCCAGGAGATCAGTTGATG
TTGAGAATCTCTGCGAGGAGAAGAAATGAAGTGTTTTGCTTTGGTTTCGAATTCGTTGCAGTTTCTGTGATTCAGATTTT
CAGTATTACAGAAGGCATGGAAGTGCATGAAAGTAGTCGTACTGAAAATTGCATTGGTGGCTCATATTTTGTTCTTCATG
ATTACACCTTGAGATTTTTGTACCCTCAAATTTAACCGTAGAAGAAATAAAAGGGTAAGGTAGTTTAAATGTAATAAGAT
CACAATTCTGACAGTACTGGATATTGCACTGCTAGCTTATAATTTTTCCCCCTTCAGTTCATTGCCCTGTATTTTCAAAA
CCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis