Browse Element(s) Details


Os.6152.1.S1_at

Description gb:AK066089.1
DB_XREF= gi:32976107
TID=Os.6152.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013054O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013054O21, full insert sequence.
FL= gb:AK066089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0890011/11expressed protein
LOC_Os05g088601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6152.1.S1_at--927--2231Chr05:4904831..4904855 (25 bp)
ACAATCCGGTCAGTCTCAAAGCAGA
LOC_Os05g08900
Os.6152.1.S1_at--660--8351Chr05:4904881..4904905 (25 bp)
GGCGGCCGGGTCATTCAGGCAATCA
LOC_Os05g08900
Os.6152.1.S1_at--728--931Chr05:4904897..4904921 (25 bp)
AGGCAATCACGATGCTCGTGGCGAC
LOC_Os05g08900
Os.6152.1.S1_at--63--8712Chr05:4905017..4905041 (25 bp)
TGTGCCTCTCGATGTACGAGCGCCT
LOC_Os05g08900
Os.6152.1.S1_at--279--4531Chr05:4905042..4905066 (25 bp)
GCCGCCTCCGCTGGAAGAAATACAG
LOC_Os05g08900
Os.6152.1.S1_at--640--7871Chr05:4905238..4905262 (25 bp)
GGTTTCTACCTACTGTTCGTCTACA
LOC_Os05g08900
Os.6152.1.S1_at--1060--8791Chr05:4905251..4905275 (25 bp)
TGTTCGTCTACAGGCCTGTGACCAT
LOC_Os05g08900
Os.6152.1.S1_at--874--151Chr05:4905274..4905298 (25 bp)
ATTTCCTCCTACTCCGAAATGGATA
LOC_Os05g08900
Os.6152.1.S1_at--855--5571Chr05:4905289..4905313 (25 bp)
GAAATGGATACCTGCAAACACAAGC
LOC_Os05g08900
Os.6152.1.S1_at--175--2411Chr05:4905304..4905328 (25 bp)
AAACACAAGCAGTCGTCGCCCAAGC
LOC_Os05g08900
Os.6152.1.S1_at--1102--2671Chr05:4905325..4905349 (25 bp)
AAGCTCGACCAGATGGTATAACGAA
LOC_Os05g08900
Target Sequence 
ACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATG
CTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGC
CTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGG
GGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTC
GCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGC
GGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACA
AGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis