Browse Element(s) Details


Os.53709.1.S1_at

Description gb:AK099415.1
DB_XREF= gi:32984624
TID=Os.53709.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013005I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005I22, full insert sequence.
FL= gb:AK099415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3644011/11Sugar transporter family protein, expressed
LOC_Os11g401801/11dirigent, putative
LOC_Os12g043501/11Sulfotransferase domain containing protein, expressed
LOC_Os05g455701/11hypothetical protein
LOC_Os04g511501/11transposon protein, putative, unclassified, expressed
LOC_Os05g088901/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008146molecular_functionsulfotransferase activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53709.1.S1_at--527--23324Chr12:25680775..25680794 (20 bp)
AAAGTATTTTCTACACCTAGATGTG
NONE
Os.53709.1.S1_at--489--5111Chr02:22006016..22006040 (25 bp)
GCACATAGTTTAAACCATAAGCGTT
LOC_Os02g36440
Os.53709.1.S1_at--1035--1631Chr02:22006035..22006059 (25 bp)
AGCGTTACAAGCATGTTTGTCCGAA
LOC_Os02g36440
Os.53709.1.S1_at--758--9451Chr02:22006051..22006075 (25 bp)
TTGTCCGAAACGTAGTGGTTATCCG
LOC_Os02g36440
Os.53709.1.S1_at--448--6791Chr02:22006068..22006092 (25 bp)
GTTATCCGAAACCATAAGCGTTACA
LOC_Os02g36440
Os.53709.1.S1_at--342--9792Chr02:22006132..22006156 (25 bp)
TAAGTTCATTTTACGTCCCTCATTG
LOC_Os02g36440
Os.53709.1.S1_at--122--7251Chr02:22006146..22006170 (25 bp)
GTCCCTCATTGTGATGTTGACTTTG
LOC_Os02g36440
Os.53709.1.S1_at--20--6671Chr02:22006161..22006185 (25 bp)
GTTGACTTTGAAATTCGGTCTCTCA
LOC_Os02g36440
Os.53709.1.S1_at--889--3151Chr02:22006172..22006196 (25 bp)
AATTCGGTCTCTCAGTATGCCAAAC
LOC_Os02g36440
Os.53709.1.S1_at--429--10111Chr02:22006187..22006211 (25 bp)
TATGCCAAACCGGTGTACCCAAGGT
LOC_Os02g36440
Os.53709.1.S1_at--448--6931Chr02:22006200..22006224 (25 bp)
TGTACCCAAGGTTCCAGGGAAGTAT
LOC_Os02g36440
Target Sequence 
AAAGTATTTTCTACACCTAGATGTGTATGCACATAGTTTAAACCATAAGCGTTACAAGCATGTTTGTCCGAAACGTAGTG
GTTATCCGAAACCATAAGCGTTACAAGCATATTTAACGTTAATTTGGATCTGTAAATGTAGGGATAAGTTCATTTTACGT
CCCTCATTGTGATGTTGACTTTGAAATTCGGTCTCTCAGTATGCCAAACCGGTGTACCCAAGGTTCCAGGGAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis