Browse Element(s) Details


OsAffx.24597.1.S1_at

Description tigr:9630.m03475
TID=OsAffx.24597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin carboxyl-terminal hydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3640011/11Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24597.1.S1_at--192--3111Chr02:21982062..21982086 (25 bp)
AATAGTTCGCTCACAAGCTGCCTGA
LOC_Os02g36400
OsAffx.24597.1.S1_at--530--4471Chr02:21982043..21982067 (25 bp)
GCCTGAAGAGCTTCTTTTCCACTGA
LOC_Os02g36400
OsAffx.24597.1.S1_at--784--891Chr02:21981631..21981655 (25 bp)
AGGCGCCACACGTATTGGTGATCCA
LOC_Os02g36400
OsAffx.24597.1.S1_at--825--8611Chr02:21981616..21981640 (25 bp)
TGGTGATCCACCTGAAGCGCTTCAA
LOC_Os02g36400
OsAffx.24597.1.S1_at--106--1191Chr02:21981592..21981616 (25 bp)
AGTACGTTGAGCAGCTTAGCCGGCA
LOC_Os02g36400
OsAffx.24597.1.S1_at--1160--6971Chr02:21981555..21981579 (25 bp)
GTACCGAGTGGTATATCCCCTGGAG
LOC_Os02g36400
OsAffx.24597.1.S1_at--733--3731Chr02:21981485..21981509 (25 bp)
CTCTTTGCGGTTGTAGTCCATGTTG
LOC_Os02g36400
OsAffx.24597.1.S1_at--718--9811Chr02:21981411..21981435 (25 bp)
TAACTGGCTTTCTTTCGACGATGAC
LOC_Os02g36400
OsAffx.24597.1.S1_at--903--6311Chr02:21981392..21981416 (25 bp)
GATGACACCGTCCAGATCAGCGAGG
LOC_Os02g36400
OsAffx.24597.1.S1_at--661--2511Chr02:21981354..21981378 (25 bp)
AACATTCTATGGCTCTTCTCGGGAG
LOC_Os02g36400
OsAffx.24597.1.S1_at--354--8631Chr02:21981324..21981348 (25 bp)
TGGTGGCAACACAGATCATGGCTAT
LOC_Os02g36400
Target Sequence 
AATAGTTCGCTCACAAGCTGCCTGAAGAGCTTCTTTTCCACTGAGATTTTAAATGGCGAGGATAAGTTCTTTTGTGACAA
ATGCAGCAGTTTGCAAGAAGCACACAAGAGAATGAAGATAAAGAAGGCGCCACACGTATTGGTGATCCACCTGAAGCGCT
TCAAGTACGTTGAGCAGCTTAGCCGGCACAAGAAACTGTCGTACCGAGTGGTATATCCCCTGGAGCTGAAGCTGGGCAGC
ATGTCTGAAGACGCTGACTGCGAGTACTCCCTCTTTGCGGTTGTAGTCCATGTTGGGAGCAGCCCCAACCATGGACACTA
CGTAAGCCAAATTAAAAGCCATGGTAACTGGCTTTCTTTCGACGATGACACCGTCCAGATCAGCGAGGAATCCACCCTGC
AAACATTCTATGGCTCTTCTCGGGAGCATTGTGGTGGCAACACAGATCATGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis