Browse Element(s) Details


Os.4180.1.S1_at

Description gb:AB024337.1
DB_XREF= gi:5689254
GEN=cry1
TID=Os.4180.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4180 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for blue-light photoreceptor, complete cds.
PROD=blue-light photoreceptor
FL= gb:AB073546.1 gb:AB024337.1 gb:AK064910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3638010/11Cryptochrome 1 apoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36350Os.54148.1.S1_at11/112+21944016..21945903expressed protein
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006290biological_processpyrimidine dimer repair
GO:0009411biological_processresponse to UV
GO:0009414biological_processresponse to water deprivation
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009640biological_processphotomorphogenesis
GO:0009785biological_processblue light signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010118biological_processstomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005634cellular_componentnucleus
GO:0003914molecular_functionDNA (6-4) photolyase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0009882molecular_functionblue light photoreceptor activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4180.1.S1_at--784--9651Chr02:21973669..21973693 (25 bp)
TCAGACTACAATTCACCGGGCACGG
LOC_Os02g36380
Os.4180.1.S1_at--735--6671Chr02:21973697..21973721 (25 bp)
GTTGCGCCGTCTACGTCAGAGGCAT
LOC_Os02g36380
Os.4180.1.S1_at--205--3751Chr02:21973789..21973813 (25 bp)
CTCAGATCACTACGCTGCCGATGAA
LOC_Os02g36380
Os.4180.1.S1_at--1128--6311Chr02:21973867..21973891 (25 bp)
GATGAACTGGAGTCAGCTCTCGCAG
LOC_Os02g36380
Os.4180.1.S1_at--278--9671Chr02:21973879..21973903 (25 bp)
TCAGCTCTCGCAGTCATTGTGAGTT
LOC_Os02g36380
Os.4180.1.S1_at--951--8671Chr02:21973896..21974097 (25 bp)
TGTGAGTTCACACGCACGGACAACA
LOC_Os02g36380
Os.4180.1.S1_at--673--391Chr02:21974180..21974204 (25 bp)
ATCACCTTTTGTTTGTCTATAGCCT
LOC_Os02g36380
Os.4180.1.S1_at--1117--7131Chr02:21974194..21974218 (25 bp)
GTCTATAGCCTTGGTGTGCATGAAT
LOC_Os02g36380
Os.4180.1.S1_at--824--6151Chr02:21974331..21974355 (25 bp)
GAGGTTATTCTAGCATTATGTCTTA
LOC_Os02g36380
Os.4180.1.S1_at--523--7151Chr02:21974350..21974374 (25 bp)
GTCTTAGACTTGTACATTCTCCCTT
LOC_Os02g36380
Os.4180.1.S1_at--951--7011NONE
GTACATTCTCCCTTTGGTTTATTGT
NONE
Target Sequence 
TCAGACTACAATTCACCGGGCACGGGGCGTTGCGCCGTCTACGTCAGAGGCATCAAGCAACTGGACTTGGGAGAGAAGGC
GGCGTGGTGCCCGTCTGGTCGCCTCCGGCAGCGTCAGGCCCCTCAGATCACTACGCTGCCGATGAAGCTGACATTACCAG
TAGAAGTTATTTGGACAGGCATCCACAGTCGCATACGTTGATGAACTGGAGTCAGCTCTCGCAGTCATTGTGAGTTCACA
CGCACGGACAACAGGCTGGGAAGTGGAAAATTAATGCTGATTGTCAGAATTAATCATTAGGAAGGTCGACATTGAGAAGA
ATTCATATGTAAATTATCACCTTTTGTTTGTCTATAGCCTTGGTGTGCATGAATCAAGTGATGAAGCTTCCTTGATGCAA
TAATGATTATGTAAAGCTAGTTTTACAGAACATTTGTGGTATAGGTTTGCTAGTTGTCAAAAGGATATGTACTATTTGTT
AGATAAGAGGTTATTCTAGCATTATGTCTTAGACTTGTACATTCTCCCTTTGGTTTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis