Browse Element(s) Details


Os.54148.1.S1_at

Description gb:AK102182.1
DB_XREF= gi:32987391
TID=Os.54148.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086M11, full insert sequence.
FL= gb:AK102182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3635011/11expressed protein
LOC_Os05g308801/11Surfeit locus protein 6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os02g36350Os.54148.1.S1_at11/112+21944016..21945903expressed protein
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54148.1.S1_at--864--8551Chr02:21944602..21944626 (25 bp)
TGGAGGCACTACGTCAGGAGAACGA
LOC_Os02g36350
Os.54148.1.S1_at--528--891Chr02:21944503..21944527 (25 bp)
AGGCCGCCGATCACGGTCATGGCGC
LOC_Os02g36350
Os.54148.1.S1_at--869--2031Chr02:21944290..21944314 (25 bp)
ACTTCGACTACGAGTTCGACCACTT
LOC_Os02g36350
Os.54148.1.S1_at--77--2752Chr05:17851583..17851722 (25 bp)
AAGAAGAGGAGGTCGATCCTAAGGA
LOC_Os05g30880
Os.54148.1.S1_at--640--2691Chr02:21944172..21944196 (25 bp)
AAGCTTGTACAAGCGCAACCTAGCG
LOC_Os02g36350
Os.54148.1.S1_at--14--2671Chr02:21944162..21944186 (25 bp)
AAGCGCAACCTAGCGCCGGTGATTC
LOC_Os02g36350
Os.54148.1.S1_at--579--1651Chr02:21944151..21944175 (25 bp)
AGCGCCGGTGATTCACTACTAGTAG
LOC_Os02g36350
Os.54148.1.S1_at--665--6511Chr02:21944127..21944151 (25 bp)
GATTTTTACTACTTAGGTTGATCTA
LOC_Os02g36350
Os.54148.1.S1_at--779--631Chr02:21944096..21944120 (25 bp)
ATGCTTTAATGTTTTCGCGTGATGC
LOC_Os02g36350
Os.54148.1.S1_at--521--10291Chr02:21944084..21944108 (25 bp)
TTTCGCGTGATGCTTTGTATGGTAC
LOC_Os02g36350
Os.54148.1.S1_at--957--6331Chr02:21944076..21944100 (25 bp)
GATGCTTTGTATGGTACGTGTTTGA
LOC_Os02g36350
Target Sequence 
TGGAGGCACTACGTCAGGAGAACGAGAGCCTCAAGGCCAGCGAGGCCGANGGCGCGCGGGCGCGCCAAGGAGCTCGACGG
CCAGCTCGCGGCANCACGGAAGGCCGCCGATCACGGTCATGGCGCCGGCGAGCTCGCGGCGGCGGCCGACCCCTTGTCGT
CGCTGCACAANGTGGAGGGGCGACATGCATGGNCAAGCTNCAGCGCCACATTNCCTGGNACTCCAACAGGGTGATGGNCG
GGCANGAAGGACCGGNATGTTCGCGTCGCTNCAGCAACATCGCCGAGCTCAAGTCGGCGGCGGCCGCGGCGGCCATGGAC
GACTTCGACTACGAGTTCGACCACTTCGACGGCGGGCAGTACGGCGACCTGGACCACGCCATGAAGCAGAAGAAGAGGAG
GTCGATCCTAAGGAAGTTCGGGGATTTCTTCCGGAGGAGAAGCTTGTACAAGCGCAACCTAGCGCCGGTGATTCACTACT
AGTAGATTTTTACTACTTAGGTTGATCTAGATTAGATGCTTTAATGTTTTCGCGTGATGCTTTGTATGGTACGTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis