Browse Element(s) Details


Os.7335.1.S1_at

Description gb:AK069475.1
DB_XREF= gi:32979499
TID=Os.7335.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020F21, full insert sequence.
FL= gb:AK069475.1 gb:AK058464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3634011/11Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os02g36350Os.54148.1.S1_at11/112+21944016..21945903expressed protein
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003935molecular_functionGTP cyclohydrolase II activity
GO:0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7335.1.S1_at--530--3291Chr02:21925301..21925325 (25 bp)
CAAAGTATGGTGGTCTCAAGGGTTA
LOC_Os02g36340
Os.7335.1.S1_at--401--51Chr02:21925273..21925297 (25 bp)
ATTGAGCATTGTGGGCAGGGTTCCC
LOC_Os02g36340
Os.7335.1.S1_at--394--4991Chr02:21925259..21925283 (25 bp)
GCAGGGTTCCCTTGGTAACTCCAAT
LOC_Os02g36340
Os.7335.1.S1_at--527--4851Chr02:21925158..21925182 (25 bp)
GCTAGCCATCAGACGGGCAGCAATG
LOC_Os02g36340
Os.7335.1.S1_at--1099--10431Chr02:21925117..21925141 (25 bp)
TTAGGCCAATCGGACTCAGGTTCAC
LOC_Os02g36340
Os.7335.1.S1_at--979--1011Chr02:21925100..21925124 (25 bp)
AGGTTCACATTCTAATCCACGACAA
LOC_Os02g36340
Os.7335.1.S1_at--176--331Chr02:21924908..21924932 (25 bp)
ATAAACTGCTCCCTAGCGGGTACAG
LOC_Os02g36340
Os.7335.1.S1_at--582--5711Chr02:21924884..21924908 (25 bp)
GACTCCAGCCTTACCTGAATTGAGA
LOC_Os02g36340
Os.7335.1.S1_at--70--6911Chr02:21924816..21924840 (25 bp)
GTATGAATCTAACTCCCAATATTGA
LOC_Os02g36340
Os.7335.1.S1_at--31--8191Chr02:21924775..21924799 (25 bp)
GGAAGCCTTTGGATCCTTACATTAT
LOC_Os02g36340
Os.7335.1.S1_at--556--191Chr02:21924752..21924776 (25 bp)
ATTTCTTGCACTACGCATATGCTGC
LOC_Os02g36340
Target Sequence 
CAAAGTATGGTGGTCTCAAGGGTTATGGATTGAGCATTGTGGGCAGGGTTCCCTTGGTAACTCCAATCACCTCAGAGAAT
CGGAGATACCTGGAAACAAAGAGAACAAAGATGGGGCATGTATATGGATTGGCCAATGGCCAAGCTAGCCATCAGACGGG
CAGCAATGGNGCCAAAGGGGAGCATTAGGCCAATCGGACTCAGGTTCACATTCTAATCCACGACAATCTTATGTGATGGA
GTTTGTCAAATTATGCTACAACATATGTTCGTGGTGAACCAATTTTTTTTTAGCTGACAGTAGGTTGAAAGATGGGCGTA
ATAAAAGTATCCCTTTATTTGTTGTAATCCACAGNCACACAACTGGGTTATTACTGTAAATATNTACACACACATAAACT
GCTCCCTAGCGGGTACAGACTCCAGCCTTACCTGAATTGAGAAGACNGGCGATAAAAATATCGACTGAGATCCAAGGCAA
TACTAGTATGAATCTAACTCCCAATATTGAAAGAATTTTTGTTCTGGGAAGCCTTTGGATCCTTACATTATTTCTTGCAC
TACGCATATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis