Browse Element(s) Details


Os.56195.1.S1_at

Description gb:AK109591.1
DB_XREF= gi:32994800
TID=Os.56195.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C02, full insert sequence.
FL= gb:AK109591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3630011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56195.1.S1_at--93--1951Chr02:21912334..21912358 (25 bp)
ACGGCGGTGACCACGAGAGGTTCAC
LOC_Os02g36300
Os.56195.1.S1_at--873--4311Chr02:21912511..21912535 (25 bp)
CCTTCCTGGCAAGGACGGTGTCGTG
LOC_Os02g36300
Os.56195.1.S1_at--140--5651Chr02:21912558..21912582 (25 bp)
GACACCAGCGCGAAGGAGACGCCAT
LOC_Os02g36300
Os.56195.1.S1_at--29--5811Chr02:21912575..21912599 (25 bp)
GACGCCATGCCGTGATGCGGTCTGA
LOC_Os02g36300
Os.56195.1.S1_at--124--7811Chr02:21912593..21912617 (25 bp)
GGTCTGATCCGTGCAAAGCCGGCGA
LOC_Os02g36300
Os.56195.1.S1_at--352--5111Chr02:21912605..21912629 (25 bp)
GCAAAGCCGGCGAGATTTTGTGAAA
LOC_Os02g36300
Os.56195.1.S1_at--477--6711Chr02:21912669..21912693 (25 bp)
GTTCGCGTGCGAAGGCTGAAAAACC
LOC_Os02g36300
Os.56195.1.S1_at--1051--2151Chr02:21912702..21912726 (25 bp)
ACACCAGGTTGTTTGCCATTTGAAA
LOC_Os02g36300
Os.56195.1.S1_at--837--10211Chr02:21912743..21912767 (25 bp)
TATTAGTAGTAATCGCGTGCACGTA
LOC_Os02g36300
Os.56195.1.S1_at--918--531Chr02:21912754..21912778 (25 bp)
ATCGCGTGCACGTAATGTACAAACC
LOC_Os02g36300
Os.56195.1.S1_at--12--7071Chr02:21912765..21912789 (25 bp)
GTAATGTACAAACCGTGGCAAATAT
LOC_Os02g36300
Target Sequence 
ACGGCGGTGACCACGAGAGGTTCACGGTGCGGCTGCCGCCGCACGTCCGGGAGGAGGTGCTCAAGTCGAGGCGCCTCCGG
CACGCCACGAGCCTCGTCCTCGGCATCAGGGGATCGAGCCGCGAGGGCAGCTCGAGGGGCGGCGGCGGGAGCTGGCACGG
CGCGCGGCGGTGGCCGTCCTTCCTGGCAAGGACGGTGTCGTGGGCGCGCGGCGGCGTGGGAGCGGACACCAGCGCGAAGG
AGACGCCATGCCGTGATGCGGTCTGATCCGTGCAAAGCCGGCGAGATTTTGTGAAAAAAAATTTCTCTTTTTATGTAGAG
GAATTAATTTAATTTGTTCGCGTGCGAAGGCTGAAAAACCTTGTACATACACCAGGTTGTTTGCCATTTGAAATTATTAT
AATTTTGCTTATTAGTAGTAATCGCGTGCACGTAATGTACAAACCGTGGCAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis