Browse Element(s) Details


OsAffx.24596.1.S1_at

Description tigr:9630.m03465
TID=OsAffx.24596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24596.1.S1_at--785--3991Chr02:21916464..21916488 (25 bp)
CGTGTATTGGGTGTACGTCGATGCT
LOC_Os02g36310
OsAffx.24596.1.S1_at--509--9931Chr02:21916451..21916475 (25 bp)
TACGTCGATGCTGGGTGAAGGAACA
LOC_Os02g36310
OsAffx.24596.1.S1_at--757--5491Chr02:21916431..21916455 (25 bp)
GAACACCGGGATGCAACCGACGAGA
LOC_Os02g36310
OsAffx.24596.1.S1_at--885--2991Chr02:21916358..21916378 (21 bp)
AATGAGAACTCTGCGGACTCGAGCA
LOC_Os02g36310
OsAffx.24596.1.S1_at--872--711Chr02:21916321..21916345 (25 bp)
ATGATCCGCCCTGGCAAGTTGTACT
LOC_Os02g36310
OsAffx.24596.1.S1_at--628--9911Chr02:21916300..21916324 (25 bp)
TACTGCCATGGCGAGCTACCGAAGT
LOC_Os02g36310
OsAffx.24596.1.S1_at--543--6231Chr02:21916267..21916291 (25 bp)
GATGGCGACACGGTGAACTACTCAA
LOC_Os02g36310
OsAffx.24596.1.S1_at--543--8971Chr02:21916254..21916278 (25 bp)
TGAACTACTCAATGATCCGGGCGCG
LOC_Os02g36310
OsAffx.24596.1.S1_at--383--10851Chr02:21916222..21916246 (25 bp)
TTGGTGCTCCTGAGCCGCGGCGAAC
LOC_Os02g36310
OsAffx.24596.1.S1_at--22--5451Chr02:21916201..21916225 (25 bp)
GAACCGGTGAATGCCCAAAGCCAGC
LOC_Os02g36310
OsAffx.24596.1.S1_at--332--5351Chr02:21916091..21916115 (25 bp)
GAAGTTGATGCCCTTCCACGGGTTG
LOC_Os02g36310
Target Sequence 
CGTGTATTGGGTGTACGTCGATGCTGGGTGAAGGAACACCGGGATGCAACCGACGAGAATGAGAACTCTGCGGACTCGAG
CAGCTCCATGAACCATGATCCGCCCTGGCAAGTTGTACTGCCATGGCGAGCTACCGAAGTGGGTGCAGGATGGCGACACG
GTGAACTACTCAATGATCCGGGCGCGCACGGTCTTGGTGCTCCTGAGCCGCGGCGAACCGGTGAATGCCCAAAGCCAGCG
GCGGTCGCGTCGCCGCATCCGGTCCTGCCACCGGAGCACATGGGCGTTGGAGGTCGGGTGCAAGTGGGATGGGAAAGGCA
CGCTGAAGTTGATGCCCTTCCACGGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis