Browse Element(s) Details


OsAffx.12372.1.S1_at

Description tigr:9630.m03466
TID=OsAffx.12372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3632011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12372.1.S1_at--391--1831Chr02:21917622..21917646 (25 bp)
ACGCGTTCCATCCCGAGTGCATCGG
LOC_Os02g36320
OsAffx.12372.1.S1_at--323--1131Chr02:21917607..21917631 (25 bp)
AGTGCATCGGCCTCTGGCTCGAGAA
LOC_Os02g36320
OsAffx.12372.1.S1_at--427--8431Chr02:21917599..21917623 (25 bp)
GGCCTCTGGCTCGAGAAGCACGTCA
LOC_Os02g36320
OsAffx.12372.1.S1_at--969--3771Chr02:21917596..21917620 (25 bp)
CTCTGGCTCGAGAAGCACGTCACCT
LOC_Os02g36320
OsAffx.12372.1.S1_at--281--991Chr02:21917416..21917440 (25 bp)
AGGATCAGGATCCAGTGCCTCGCGG
LOC_Os02g36320
OsAffx.12372.1.S1_at--399--571Chr02:21917272..21917296 (25 bp)
ATCCTCATGTCGCACAGGCTGAGGC
LOC_Os02g36320
OsAffx.12372.1.S1_at--507--9631Chr02:21917268..21917292 (25 bp)
TCATGTCGCACAGGCTGAGGCACGT
LOC_Os02g36320
OsAffx.12372.1.S1_at--336--9351Chr02:21917263..21917287 (25 bp)
TCGCACAGGCTGAGGCACGTGACGA
LOC_Os02g36320
OsAffx.12372.1.S1_at--876--8331Chr02:21917256..21917280 (25 bp)
GGCTGAGGCACGTGACGAGCGCGGT
LOC_Os02g36320
OsAffx.12372.1.S1_at--883--9271Chr02:21917163..21917187 (25 bp)
TCCTGTCGCTGTTCGTGCCCGGAGC
LOC_Os02g36320
OsAffx.12372.1.S1_at--1067--3191Chr02:21917105..21917129 (25 bp)
CAAGGCGGCGGAAGGGTCGTCTCGC
LOC_Os02g36320
Target Sequence 
ACGCGTTCCATCCCGAGTGCATCGGCCTCTGGCTCGAGAAGCACGTCACCTGCCCGCTCTGCCGCGCCAACGTCCTCGAC
GCGCCGCCGCCGCCGCCCCCTCCCCCGCCTTCGCTGGAGCAGGACACGGCGTCGCCGCCGCCGGCTCACGAGACGGTGGT
GGTGATCGGCGACGCCGGCGCCAGCGAGGAGGCGGAAGCGGAAGAGAGGATCAGGATCCAGTGCCTCGCGGGGGTCCGTC
GCGCGGCGGGGCGGCAGGCTCTCCCGCGGTCGAACTCGACGGGGCACGAGCGCGGCGGCGGCGGGATGGAGCGGTTCGCG
CTGCGGCTGCCGGAGCACGTCCGCCTCGAGATCCTCATGTCGCACAGGCTGAGGCACGTGACGAGCGCGGTGGCGTCCGT
GCGCGTCAGGGAGGGGAGCGCCCACGACGCCGGCGCCGTGCGGAACGCCGTGGCGAGGCTCCTGTCGCTGTTCGTGCCCG
GAGCCGGGTGGAAGGGAGACGACGAGGGCAAGTCCAGCAAGGCGGCGGAAGGGTCGTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis