Browse Element(s) Details


Os.17571.1.S1_at

Description gb:AK101003.1
DB_XREF= gi:32986212
TID=Os.17571.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147I20, full insert sequence.
FL= gb:AK101003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3628011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36250OsAffx.29972.1.S1_x_at2/112+21879210..21879506hypothetical protein
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36280Os.17571.1.S1_at11/112+21898729..21900369Cytochrome P450 family protein, expressed
LOC_Os02g36290OsAffx.24595.2.S1_x_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.2.S1_at11/112+21907156..21907607hypothetical protein
LOC_Os02g36290OsAffx.24595.1.S1_s_at7/112+21907156..21907607hypothetical protein
LOC_Os02g36300Os.56195.1.S1_at11/112+21911530..21912810Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36310OsAffx.24596.1.S1_at11/112+21915738..21916590hypothetical protein
LOC_Os02g36320OsAffx.12372.1.S1_at11/112+21917048..21918094Zinc finger, C3HC4 type family protein
LOC_Os02g36330NANA2+21921853..21922910Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g36340Os.7335.1.S1_at11/112+21924751..21929696Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17571.1.S1_at--1107--4011Chr02:21899231..21899255 (25 bp)
CGTACCTCCAGTGCGTGTTCAAGGA
LOC_Os02g36280
Os.17571.1.S1_at--678--3991Chr02:21899188..21899212 (25 bp)
CGTGGGCTCGATACTGGTCCCTCAC
LOC_Os02g36280
Os.17571.1.S1_at--597--8591Chr02:21899174..21899198 (25 bp)
TGGTCCCTCACCTGGCGGTGCAGGA
LOC_Os02g36280
Os.17571.1.S1_at--868--1771Chr02:21899041..21899065 (25 bp)
ACCGGAGCGCTTCTTGCACAAGGAG
LOC_Os02g36280
Os.17571.1.S1_at--164--4711Chr02:21898999..21899023 (25 bp)
GCTGGAATTGCGAGGGAAAGACTAC
LOC_Os02g36280
Os.17571.1.S1_at--60--5331Chr02:21898980..21899004 (25 bp)
GACTACGAGTACATCCCGTTCGGGT
LOC_Os02g36280
Os.17571.1.S1_at--1147--7231Chr02:21898852..21898876 (25 bp)
GTCGCCTGATGACATGGACATGACT
LOC_Os02g36280
Os.17571.1.S1_at--582--8131Chr02:21898837..21898861 (25 bp)
GGACATGACTGAGAAGTTTGCCACT
LOC_Os02g36280
Os.17571.1.S1_at--349--9811Chr02:21898810..21898834 (25 bp)
TAACGTGCTTGCTACCCCTTTGAAG
LOC_Os02g36280
Os.17571.1.S1_at--1161--10251Chr02:21898792..21898816 (25 bp)
TTTGAAGGCTGTGCCAGTCGCGTCA
LOC_Os02g36280
Os.17571.1.S1_at--84--1151Chr02:21898777..21898801 (25 bp)
AGTCGCGTCACACACTAGTTAGGGT
LOC_Os02g36280
Target Sequence 
CGTACCTCCAGTGCGTGTTCAAGGAGGCGATGCGGCTGCACCCCGTGGGCTCGATACTGGTCCCTCACCTGGCGGTGCAG
GACGGCNTCGAGATCGGTGGCTACNCCGTGCCCAAGGGCACCNCGGTGATCTTCAACGCGTGGGCGATCATGCGCGACCC
GGCGGCGTGGGAGAGCCCCGACCAATTCCTACCGGAGCGCTTCTTGCACAAGGAGGAGTCNTCATCACCTCCGCTGGAAT
TGCGAGGGAAAGACTACGAGTACATCCCGTTCGGGTCCGGCANGGAGGTTGTGCCCCGGCCTGCCACTGGCAGAGCGCGC
CGTGCCCTTCATACTGGCGTCCCTGCTGCACGCGTTCGAGTGGCGGCTTCCGGACGGCATGTCGCCTGATGACATGGACA
TGACTGAGAAGTTTGCCACTGNTAACGTGCTTGCTACCCCTTTGAAGGCTGTGCCAGTCGCGTCACACACTAGTTAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis