Browse Element(s) Details


OsAffx.29972.1.S1_x_at

Description tigr:9637.m01935
TID=OsAffx.29972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2227011/11expressed protein
LOC_Os04g088202/11hypothetical protein
LOC_Os02g362502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22230OsAffx.22699.1.S1_x_at3/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.20415.1.S1_at2/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.18275.1.S1_x_at1/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22240OsAffx.16205.1.S1_at2/119+13449950..13452360hypothetical protein
LOC_Os09g22250OsAffx.29971.1.S1_at10/119+13458134..13460045hypothetical protein
LOC_Os09g22260NANA9+13461060..13462659transposon protein, putative, unclassified
LOC_Os09g22270OsAffx.29972.1.S1_x_at11/119+13469155..13469833expressed protein
LOC_Os09g22280OsAffx.17847.1.S1_at11/119+13470507..13471765hypothetical protein
LOC_Os09g22280Os.53286.1.S1_s_at8/119+13470507..13471765hypothetical protein
LOC_Os09g22300NANA9+13473960..13474328leucine-rich repeat protein kinase, putative
LOC_Os09g22310OsAffx.18556.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.278.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.3860.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22320OsAffx.22699.1.S1_x_at1/119+13482895..13489070retrotransposon protein, putative, unclassified
LOC_Os09g22330NANA9+13491389..13493868retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29972.1.S1_x_at--381--8012Chr11:18671583..18671607 (25 bp)
GGAGGCGCTGTTCTGCTGGGTGGTG
NONE
OsAffx.29972.1.S1_x_at--814--6091Chr09:13469673..13469697 (25 bp)
GAGTCTTGACGAATCCGGTGGCAGT
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--108--1171Chr09:13469672..13469696 (25 bp)
AGTCTTGACGAATCCGGTGGCAGTG
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--459--5791Chr09:13469666..13469690 (25 bp)
GACGAATCCGGTGGCAGTGCGGGAA
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--51--3353Chr03:15829804..15829825 (22 bp)
CACGGCACCTGGTCGAGCGTCACGG
NONE
OsAffx.29972.1.S1_x_at--1028--9652Chr09:13469517..13469541 (25 bp)
TCAGCGAGCGCTGGATCAGAGCCGC
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--987--5874Chr03:2807044..2807082 (25 bp)
GAGCGCTGGATCAGAGCCGCGAGCG
NONE
OsAffx.29972.1.S1_x_at--929--8012Chr09:13469471..13469495 (25 bp)
GGAGGAACGAGATCTGGACTCAGAT
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--21--8533Chr09:13469457..13469481 (25 bp)
TGGACTCAGATTTGGAATCGTGGCT
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--25--2991Chr09:13469442..13469466 (25 bp)
AATCGTGGCTGAGGGAAGTAGCAAT
LOC_Os09g22270
OsAffx.29972.1.S1_x_at--929--8311Chr09:13469436..13469460 (25 bp)
GGCTGAGGGAAGTAGCAATTTTGAT
LOC_Os09g22270
Target Sequence 
GGAGGCGCTGTTCTGCTGGGTGGTGGTGCTGGTGGTGGTGGTGAAACCGAAGAGGACGCGGTGGGGGGGGAGGGAGTCTT
GACGAATCCGGTGGCAGTGCGGGAAGAGGAGGAGGAGAGGCGCTGGTCGGGGTCGCTCCACCACGGCACCTGGTCGAGCG
TCACGGCCGGCTCCACCCGGCCCACGCCCGGCGCCGCCGCCACCGAGGAGGCCGAGGCCGACGCGGCCGTCAGCGAGCGC
TGGATCAGAGCCGCGAGCGCGAGGGTTTGGGGAAAGGAGGAACGAGATCTGGACTCAGATTTGGAATCGTGGCTGAGGGA
AGTAGCAATTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29972.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis