Browse Element(s) Details


Os.53286.1.S1_s_at

Description gb:AK071796.1
DB_XREF= gi:32981819
TID=Os.53286.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114I06, full insert sequence.
FL= gb:AK071796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g222808/11hypothetical protein
LOC_Os04g094501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22230OsAffx.22699.1.S1_x_at3/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.20415.1.S1_at2/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.18275.1.S1_x_at1/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22240OsAffx.16205.1.S1_at2/119+13449950..13452360hypothetical protein
LOC_Os09g22250OsAffx.29971.1.S1_at10/119+13458134..13460045hypothetical protein
LOC_Os09g22260NANA9+13461060..13462659transposon protein, putative, unclassified
LOC_Os09g22270OsAffx.29972.1.S1_x_at11/119+13469155..13469833expressed protein
LOC_Os09g22280OsAffx.17847.1.S1_at11/119+13470507..13471765hypothetical protein
LOC_Os09g22280Os.53286.1.S1_s_at8/119+13470507..13471765hypothetical protein
LOC_Os09g22300NANA9+13473960..13474328leucine-rich repeat protein kinase, putative
LOC_Os09g22310OsAffx.18556.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.278.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.3860.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22320OsAffx.22699.1.S1_x_at1/119+13482895..13489070retrotransposon protein, putative, unclassified
LOC_Os09g22330NANA9+13491389..13493868retrotransposon protein, putative, unclassified
LOC_Os09g22340NANA9+13495436..13496203hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53286.1.S1_s_at--612--4051Chr09:13470476..13470500 (25 bp)
CGAGGTTAGTAGGTTGCTCAAGTAA
NONE
Os.53286.1.S1_s_at--165--6791Chr09:13470480..13470504 (25 bp)
GTTAGTAGGTTGCTCAAGTAACTGA
NONE
Os.53286.1.S1_s_at--599--9713Chr12:24115484..24115508 (25 bp)
TCAAGTAACTGAGCATGGAGATGAA
NONE
Os.53286.1.S1_s_at--694--113Chr09:13471309..13471333 (25 bp)
ATTCTATGTATATCTATCCTCCCTG
LOC_Os09g22280
Os.53286.1.S1_s_at--1129--3693Chr09:13471312..13471336 (25 bp)
CTATGTATATCTATCCTCCCTGATT
LOC_Os09g22280
Os.53286.1.S1_s_at--993--432Chr09:13471320..13471344 (25 bp)
ATCTATCCTCCCTGATTCATATATG
LOC_Os09g22280
Os.53286.1.S1_s_at--501--10152Chr09:13471323..13471347 (25 bp)
TATCCTCCCTGATTCATATATGTGA
LOC_Os09g22280
Os.53286.1.S1_s_at--123--3812Chr09:13471327..13471351 (25 bp)
CTCCCTGATTCATATATGTGATTTA
LOC_Os09g22280
Os.53286.1.S1_s_at--127--791Chr09:13471342..13471366 (25 bp)
ATGTGATTTATTGCTGAAACTTCAT
LOC_Os09g22280
Os.53286.1.S1_s_at--247--71Chr09:13471351..13471375 (25 bp)
ATTGCTGAAACTTCATTACTTGAGG
LOC_Os09g22280
Os.53286.1.S1_s_at--86--2051Chr09:13471360..13471533 (25 bp)
ACTTCATTACTTGAGGGGTTCCTGA
LOC_Os09g22280
Target Sequence 
CGAGGTTAGTAGGTTGCTCAAGTAACTGAGCATGGAGATGAAGACCAACAAAGTATGCTTCAGAGAAAAGCGCTGGTGTC
CGGCAGCACGGCTACGCGGCAGGGACATGCGCGTGGCAAGTGGCGAGGCAGCAGGCAGCAGGCGCGATGCAGCAGGCGGA
AGGCAAGCAGCAGCAGCAGCATGATTCTATGTATATCTATCCTCCCTGATTCATATATGTGATTTATTGCTGAAACTTCA
TTACTTGAGGGGTTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53286.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis