Browse Element(s) Details


OsAffx.29971.1.S1_at

Description tigr:9637.m01933
TID=OsAffx.29971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2225010/11hypothetical protein
LOC_Os09g020401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22210OsAffx.7616.1.S1_at3/119+13433663..13434462hypothetical protein
LOC_Os09g22210OsAffx.29786.1.S1_x_at1/119+13433663..13434462hypothetical protein
LOC_Os09g22220NANA9+13439221..13442439hypothetical protein
LOC_Os09g22230OsAffx.22699.1.S1_x_at3/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.20415.1.S1_at2/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22230OsAffx.18275.1.S1_x_at1/119+13442938..13449533retrotransposon protein, putative, unclassified
LOC_Os09g22240OsAffx.16205.1.S1_at2/119+13449950..13452360hypothetical protein
LOC_Os09g22250OsAffx.29971.1.S1_at10/119+13458134..13460045hypothetical protein
LOC_Os09g22260NANA9+13461060..13462659transposon protein, putative, unclassified
LOC_Os09g22270OsAffx.29972.1.S1_x_at11/119+13469155..13469833expressed protein
LOC_Os09g22280OsAffx.17847.1.S1_at11/119+13470507..13471765hypothetical protein
LOC_Os09g22280Os.53286.1.S1_s_at8/119+13470507..13471765hypothetical protein
LOC_Os09g22300NANA9+13473960..13474328leucine-rich repeat protein kinase, putative
LOC_Os09g22310OsAffx.18556.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.278.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22310OsAffx.3860.1.S1_at1/119+13475639..13481637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22320OsAffx.22699.1.S1_x_at1/119+13482895..13489070retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29971.1.S1_at--936--1211Chr09:13459160..13459184 (25 bp)
AGTTAGGCAGATCTCACAGGCCGCC
LOC_Os09g22250
OsAffx.29971.1.S1_at--312--931Chr09:13459156..13459180 (25 bp)
AGGCAGATCTCACAGGCCGCCGTGT
LOC_Os09g22250
OsAffx.29971.1.S1_at--843--3292Chr06:10211352..10211373 (22 bp)
CACAGGCCGCCGTGTTTTCCGTCAA
NONE
OsAffx.29971.1.S1_at--113--10311NONE
TTCCGTCAACAGTCCTCCTTTACGT
NONE
OsAffx.29971.1.S1_at--733--2491Chr09:13458227..13458249 (23 bp)
AACAGTCCTCCTTTACGTCATGCAA
LOC_Os09g22250
OsAffx.29971.1.S1_at--807--3811Chr09:13458220..13458244 (25 bp)
CTCCTTTACGTCATGCAACATCTGA
LOC_Os09g22250
OsAffx.29971.1.S1_at--473--3672Chr12:14553346..14553365 (20 bp)
CTTTACGTCATGCAACATCTGACCA
NONE
OsAffx.29971.1.S1_at--620--9291Chr09:13458186..13458210 (25 bp)
TCCGCACCGTCGTTGTCTTCAACAT
LOC_Os09g22250
OsAffx.29971.1.S1_at--575--1771Chr09:13458181..13458205 (25 bp)
ACCGTCGTTGTCTTCAACATCCTCG
LOC_Os09g22250
OsAffx.29971.1.S1_at--950--3651Chr09:13458170..13458194 (25 bp)
CTTCAACATCCTCGTTGTTAACGAC
LOC_Os09g22250
OsAffx.29971.1.S1_at--382--2052Chr09:13458165..13458189 (25 bp)
ACATCCTCGTTGTTAACGACCAAAT
LOC_Os09g22250
Target Sequence 
AGTTAGGCAGATCTCACAGGCCGCCGTGTTTTCCGTCAACAGTCCTCCTTTACGTCATGCAACATCTGACCAAGATCATC
CGCACCGTCGTTGTCTTCAACATCCTCGTTGTTAACGACCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis