Browse Element(s) Details


OsAffx.3860.1.S1_at

Description tigr:9632.m02085
TID=OsAffx.3860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2255011/11hypothetical protein
LOC_Os09g223101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22500NANA4+12717238..12719618retrotransposon protein, putative, unclassified
LOC_Os04g22510OsAffx.26099.1.S1_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22510OsAffx.26099.1.S1_x_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22520OsAffx.20730.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.20733.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.9790.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.1197.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22540OsAffx.26101.1.S1_at11/114+12742096..12743205hypothetical protein
LOC_Os04g22550OsAffx.3860.1.S1_at11/114+12744349..12745621hypothetical protein
LOC_Os04g22560Os.45161.1.A1_x_at3/114+12748299..12749075hypothetical protein
LOC_Os04g22570NANA4+12749781..12757141retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22580NANA4+12758415..12761591retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22590OsAffx.22699.1.S1_x_at2/114+12763827..12767489retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3860.1.S1_at--81--5191Chr04:12745383..12745407 (25 bp)
GCAAGGCGTCATGATCAAGTCGGAT
LOC_Os04g22550
OsAffx.3860.1.S1_at--564--2811Chr04:12745298..12745322 (25 bp)
AAGTTCCCTCATGTCCCAAGGTATT
LOC_Os04g22550
OsAffx.3860.1.S1_at--155--10131Chr04:12745238..12745262 (25 bp)
TATGAGTCCACAATCGAAGCTGCCC
LOC_Os04g22550
OsAffx.3860.1.S1_at--420--3831Chr04:12745219..12745243 (25 bp)
CTGCCCATGGTGACGAGAATACAAA
LOC_Os04g22550
OsAffx.3860.1.S1_at--600--9851Chr04:12744724..12745224 (25 bp)
TACAAAGGCGAAGTTCGGCACCCGT
LOC_Os04g22550
OsAffx.3860.1.S1_at--1063--9271Chr04:12744681..12744705 (25 bp)
TCCGGTGAATCAAGGGCAGCCTTTA
LOC_Os04g22550
OsAffx.3860.1.S1_at--27--10491Chr04:12744659..12744683 (25 bp)
TTAAGGCCGAACCATGCCCCGATGA
LOC_Os04g22550
OsAffx.3860.1.S1_at--303--10451Chr04:12744623..12744647 (25 bp)
TTAGAACTGATCGAGCTGGCAAAGC
LOC_Os04g22550
OsAffx.3860.1.S1_at--1077--5551Chr04:12744505..12744529 (25 bp)
GAAAGACCTATACTACGCCGTTCAT
LOC_Os04g22550
OsAffx.3860.1.S1_at--452--6752Chr09:13477628..13477651 (24 bp)
GTTCATGGACACTCTTCGCACACAA
LOC_Os09g22310
OsAffx.3860.1.S1_at--725--2471Chr04:12744429..12744453 (25 bp)
AACACTCAAGAGCTCAGGCAGCAGC
LOC_Os04g22550
Target Sequence 
GCAAGGCGTCATGATCAAGTCGGATGGCGAAAAGGGTTTGCCGTTGAGTTGGGGGATCAAGAATCATCCCATCCCACCCC
AGTTCAAGTTCCCTCATGTCCCAAGGTATTCGGGAGAAACGGATCCGAAGGAGTTCCTCTCCATCTATGAGTCCACAATC
GAAGCTGCCCATGGTGACGAGAATACAAAGGCGAAGTTCGGCACCCGTTCTGATTCACTCAACCCCTCCGGTGAATCAAG
GGCAGCCTTTAAGGCCGAACCATGCCCCGATGACATGGAAAAATTTAGAACTGATCGAGCTGGCAAAGCAGTGATGGCAG
GAGAAGAAGTGCAAGCCCTTCGCAAGGAGTTCGACGCTCAGCAAGCGGGCGGCCAGCAACAACCTTTTCGCAAAAAGATC
AGGAAAGACCTATACTACGCCGTTCATGGACACTCTTCGCACACAACCGAGCAATGCCGGAACATTCGGCAGCAAGGCAA
CACTCAAGAGCTCAGGCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis